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S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00578
Bact-VirS2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00578
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-96
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00201__D5-103
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4orlA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 42.0 | 3.97e-01 | 80.0% | 50.9% |
| 3fcxB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.67 | 46.0 | 3.25e-01 | 72.6% | 24.4% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.65 | 38.0 | 4.60e-01 | 73.7% | 91.7% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 35.0 | 3.37e-01 | 73.7% | 48.1% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 37.0 | 3.43e-01 | 82.1% | 46.3% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 43.0 | 2.78e-01 | 77.9% | 25.9% |
| 3ar4A04 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.58 | 40.0 | 3.02e-01 | 71.6% | 45.5% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.57 | 35.0 | 4.10e-01 | 74.7% | 90.5% |
| 1v5mA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 42.0 | 3.76e-01 | 78.9% | 75.7% |
| 6w0pB01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.56 | 50.0 | 3.54e-01 | 98.9% | 74.4% |
| 2h2yA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 47.0 | 4.50e-01 | 97.9% | 100.0% |
| 1h54B01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.55 | 43.0 | 3.08e-01 | 82.1% | 78.8% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.54 | 32.0 | 3.87e-01 | 73.7% | 94.9% |
| 2vckA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.54 | 46.0 | 3.60e-01 | 94.7% | 76.9% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 32.0 | 3.51e-01 | 73.7% | 70.9% |
| 3g8yA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 42.0 | 2.74e-01 | 83.2% | 27.9% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.53 | 40.0 | 3.58e-01 | 82.1% | 67.9% |
| 1y4wA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 44.0 | 3.04e-01 | 93.7% | 91.8% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 45.0 | 3.09e-01 | 94.7% | 81.1% |
| 7mhuA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 42.0 | 2.88e-01 | 89.5% | 54.2% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 40.0 | 2.95e-01 | 83.2% | 88.3% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.50 | 43.0 | 4.23e-01 | 95.8% | 97.1% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 44.0 | 2.97e-01 | 94.7% | 26.9% |
| 3gm8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.43e-01 | 98.9% | 65.7% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.75 | 57.0 | 6.13e-01 | 78.9% | 100.0% |
| 3576406 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.73 | 49.0 | 4.28e-01 | 71.6% | 47.1% |
| 3622600 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.71 | 49.0 | 4.42e-01 | 72.6% | 53.6% |
| 3990451 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.70 | 49.0 | 3.35e-01 | 95.8% | 21.6% |
| 3795181 | 5.1.4.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 | 0.67 | 49.0 | 3.10e-01 | 74.7% | 32.9% |
| 3736331 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.67 | 47.0 | 2.99e-01 | 71.6% | 18.0% |
| 2617497 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.65 | 41.0 | 3.86e-01 | 78.9% | 53.0% |
| 3932433 | 5.1.4.267 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 | 0.64 | 46.0 | 3.00e-01 | 74.7% | 27.6% |
| 3866695 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.63 | 51.0 | 4.30e-01 | 85.3% | 56.8% |
| 5017154 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 48.0 | 4.26e-01 | 83.2% | 57.0% |
| 3889613 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.62 | 43.0 | 2.78e-01 | 70.5% | 28.0% |
| 3280330 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.62 | 44.0 | 2.89e-01 | 73.7% | 64.5% |
| 4121961 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.61 | 50.0 | 3.26e-01 | 88.4% | 27.1% |
| 4022926 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 46.0 | 2.96e-01 | 80.0% | 28.6% |
| 3359496 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.60 | 43.0 | 3.13e-01 | 74.7% | 45.7% |
| 3405004 | 5.1.4.255 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD | 0.60 | 44.0 | 2.89e-01 | 75.8% | 30.4% |
| 4363296 | 330.11.1.1 ↗ | a+b two layers › dsRBD-like › Anti-lipopolysaccharide factor (ALF) › Anti-lipopolysaccharide factor (ALF) › Anti-LPS-SCYG | 0.60 | 41.0 | 4.12e-01 | 71.6% | 71.0% |
| 4383083 | 7579.1.1.244 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S37, Peptidase_S28 | 0.60 | 42.0 | 2.70e-01 | 72.6% | 96.8% |
| 4628601 | 330.3.1.5 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › PF30110 | 0.59 | 46.0 | 4.69e-01 | 94.7% | 83.9% |
| 4970213 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 44.0 | 3.01e-01 | 77.9% | 40.9% |
| 5049444 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 42.0 | 3.10e-01 | 75.8% | 63.1% |
| 4638995 | 71.1.1.15 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 | 0.58 | 41.0 | 3.24e-01 | 86.3% | 36.1% |
| 3655033 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.58 | 43.0 | 3.86e-01 | 78.9% | 75.4% |
| 4795997 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.57 | 43.0 | 3.46e-01 | 78.9% | 42.0% |
| 4827588 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.57 | 35.0 | 2.96e-01 | 72.6% | 34.7% |
| 4961805 | 295.1.1.55 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF26414 | 0.56 | 40.0 | 4.29e-01 | 73.7% | 93.8% |
| 3496134 | 5.1.4.258 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 | 0.56 | 40.0 | 2.81e-01 | 76.8% | 54.2% |
| 3814613 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.56 | 47.0 | 4.21e-01 | 93.7% | 90.4% |
| 3820662 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.55 | 47.0 | 3.99e-01 | 94.7% | 96.2% |
| 4250791 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.55 | 39.0 | 3.04e-01 | 86.3% | 35.4% |
| 4352445 | 5.1.4.271 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 | 0.55 | 43.0 | 2.87e-01 | 84.2% | 20.8% |
| 3963449 | 12.3.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N | 0.55 | 49.0 | 3.48e-01 | 98.9% | 75.9% |
| 3845007 | 5.1.5.183 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, DUF4800, NBCH_WD40 | 0.55 | 45.0 | 2.99e-01 | 88.4% | 55.2% |
| 5070518 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.55 | 40.0 | 3.62e-01 | 77.9% | 74.1% |
| 3801119 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 49.0 | 3.35e-01 | 97.9% | 45.4% |
| 3493810 | 5.1.4.258 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 | 0.54 | 40.0 | 2.61e-01 | 80.0% | 29.1% |
| 3249471 | 71.1.1.16 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa | 0.54 | 38.0 | 2.99e-01 | 73.7% | 79.5% |
| 5038083 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 39.0 | 3.54e-01 | 74.7% | 77.4% |
| 3928894 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.53 | 46.0 | 3.68e-01 | 98.9% | 89.3% |
| 3719326 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 45.0 | 3.03e-01 | 93.7% | 73.8% |
| 5077455 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.53 | 47.0 | 3.14e-01 | 98.9% | 26.0% |
| 3991176 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 36.0 | 2.55e-01 | 72.6% | 30.5% |
| 3701742 | 5.1.4.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd | 0.51 | 41.0 | 2.60e-01 | 86.3% | 25.3% |
| 3935899 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 43.0 | 2.95e-01 | 95.8% | 45.6% |