←Back to structures
S2_006_000_R2_scaffold_44_prodigal-single.1__X__X__00245
Bact-VirS2_006_000_R2_scaffold_44_prodigal-single.1__X__X__00245
Identity
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 59-151
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8fazD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 61.0 | 4.49e-01 | 100.0% | 33.3% |
| 3vu9B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 53.0 | 4.21e-01 | 100.0% | 40.8% |
| 1w5sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 58.0 | 4.64e-01 | 100.0% | 94.2% |
| 7jgsD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 57.0 | 4.57e-01 | 100.0% | 89.0% |
| 6qv4A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 56.0 | 4.48e-01 | 100.0% | 78.7% |
| 5vlcA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.62 | 55.0 | 4.66e-01 | 100.0% | 81.0% |
| 2efjA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 56.0 | 4.28e-01 | 100.0% | 79.4% |
| 3eccA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 53.0 | 4.45e-01 | 100.0% | 93.8% |
| 3t15A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 53.0 | 4.47e-01 | 100.0% | 87.7% |
| 3b85A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 4.20e-01 | 100.0% | 59.4% |
| 1pzxA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.59 | 39.0 | 3.63e-01 | 91.4% | 51.6% |
| 2q3fA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 49.0 | 4.02e-01 | 100.0% | 49.2% |
| 4ceiB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 51.0 | 4.17e-01 | 100.0% | 67.2% |
| 2xr1B04 | 3.40.50.10890 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 51.0 | 4.19e-01 | 100.0% | 94.9% |
| 8alzB05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 51.0 | 3.94e-01 | 100.0% | 61.5% |
| 5d8nA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.57 | 44.0 | 3.52e-01 | 83.9% | 42.0% |
| 4ry9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 49.0 | 4.15e-01 | 100.0% | 66.7% |
| 6acsA00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.55 | 47.0 | 3.63e-01 | 96.8% | 76.9% |
| 1dbrC00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 48.0 | 3.73e-01 | 100.0% | 47.0% |
| 5c5cA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 47.0 | 3.91e-01 | 97.8% | 85.4% |
| 5fbhA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 46.0 | 3.80e-01 | 100.0% | 96.8% |
| 1ofuX00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 48.0 | 4.45e-01 | 100.0% | 78.8% |
| 3d02A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 48.0 | 4.06e-01 | 100.0% | 82.4% |
| 5bq3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 48.0 | 4.05e-01 | 100.0% | 81.9% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 48.0 | 3.24e-01 | 100.0% | 38.2% |
| 4n0qA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 46.0 | 4.07e-01 | 100.0% | 95.8% |
| 3lmkA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 46.0 | 3.86e-01 | 100.0% | 87.0% |
| 2fqxA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 46.0 | 3.77e-01 | 100.0% | 56.8% |
| 1vqtA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 38.0 | 3.16e-01 | 79.6% | 100.0% |
| 2ykgA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 4.30e-01 | 98.9% | 83.5% |
| 4jixB00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.52 | 37.0 | 3.57e-01 | 73.1% | 83.7% |
| 3hdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.81e-01 | 100.0% | 91.1% |
| 4ms4B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 46.0 | 3.74e-01 | 100.0% | 95.6% |
| 4maaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 45.0 | 3.80e-01 | 100.0% | 71.8% |
| 1tjyA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 46.0 | 3.93e-01 | 100.0% | 82.4% |
| 5lqdA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 45.0 | 3.56e-01 | 100.0% | 75.4% |
| 4ry8C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 45.0 | 3.81e-01 | 100.0% | 60.8% |
| 2jfzA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 44.0 | 4.08e-01 | 96.8% | 89.8% |
| 2q8pA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.50 | 44.0 | 3.66e-01 | 100.0% | 66.3% |
| 1wkvA03 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 43.0 | 4.23e-01 | 98.9% | 89.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3579390 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.78 | 63.0 | 5.23e-01 | 100.0% | 51.6% |
| 5058682 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.77 | 59.0 | 4.40e-01 | 98.9% | 34.1% |
| 3801703 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 62.0 | 4.64e-01 | 100.0% | 36.7% |
| 3719517 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 68.0 | 4.72e-01 | 100.0% | 33.3% |
| 3188993 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 65.0 | 4.45e-01 | 100.0% | 49.4% |
| 3471628 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.70 | 65.0 | 4.61e-01 | 100.0% | 37.7% |
| 3786773 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.64 | 56.0 | 5.04e-01 | 98.9% | 99.2% |
| 3686549 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 56.0 | 4.06e-01 | 100.0% | 43.0% |
| 3224228 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.63 | 47.0 | 4.09e-01 | 78.5% | 81.4% |
| 4983692 | 2007.1.2.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp | 0.62 | 54.0 | 4.69e-01 | 98.9% | 78.7% |
| 3743881 | 2004.1.1.1048 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF28922 | 0.61 | 50.0 | 4.16e-01 | 98.9% | 50.0% |
| 3923686 | 7590.1.1.6 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › ArgoMid | 0.61 | 40.0 | 3.36e-01 | 86.0% | 38.7% |
| 3277906 | 2004.1.1.239 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SLFN-g3_helicase | 0.61 | 53.0 | 4.22e-01 | 100.0% | 81.5% |
| 4936699 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 52.0 | 4.63e-01 | 97.8% | 66.9% |
| 4020941 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 52.0 | 4.00e-01 | 100.0% | 42.3% |
| 4063599 | 2004.1.1.226 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N | 0.59 | 52.0 | 4.23e-01 | 100.0% | 62.2% |
| 4946251 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.58 | 42.0 | 3.56e-01 | 98.9% | 45.8% |
| 4030963 | 7512.1.1.35 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Asp1 | 0.57 | 51.0 | 4.08e-01 | 100.0% | 58.4% |
| 4165458 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.57 | 37.0 | 4.25e-01 | 92.5% | 95.4% |
| 3186920 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 51.0 | 3.93e-01 | 100.0% | 63.3% |
| 3672028 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.57 | 49.0 | 4.06e-01 | 98.9% | 82.8% |
| 2606153 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.57 | 41.0 | 4.06e-01 | 89.2% | 70.7% |
| 3648840 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.57 | 49.0 | 4.51e-01 | 98.9% | 91.2% |
| None | — | 0.56 | 49.0 | 3.36e-01 | 100.0% | 43.3% | |
| 1482007 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.56 | 49.0 | 4.33e-01 | 100.0% | 76.1% |
| 3495677 | 7585.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins | 0.56 | 42.0 | 4.06e-01 | 84.9% | 71.4% |
| 3062314 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.55 | 48.0 | 3.34e-01 | 100.0% | 50.3% |
| 3902362 | 2004.1.1.81 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GBP | 0.55 | 42.0 | 3.57e-01 | 83.9% | 49.1% |
| 3232594 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 46.0 | 3.55e-01 | 93.5% | 98.6% |
| 4192832 | 7542.1.2.1 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › Aconitase | 0.55 | 35.0 | 3.65e-01 | 98.9% | 70.6% |
| 9676 | 2004.1.1.108 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SulA | 0.54 | 48.0 | 4.45e-01 | 100.0% | 78.8% |
| 1926908 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.53 | 46.0 | 3.47e-01 | 100.0% | 62.8% |
| 4980410 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 45.0 | 2.90e-01 | 100.0% | 39.4% |
| 4463279 | 4143.1.1.5 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › RLMM_N | 0.52 | 40.0 | 4.00e-01 | 81.7% | 82.1% |
| 4984406 | 2007.1.2.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp | 0.51 | 46.0 | 4.17e-01 | 100.0% | 78.4% |
| 3614871 | 2007.2.3.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N | 0.51 | 44.0 | 3.14e-01 | 100.0% | 62.9% |
| 4069073 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 45.0 | 4.33e-01 | 100.0% | 98.1% |
| 3992774 | 7577.1.1.4 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Pyridoxal_deC | 0.51 | 44.0 | 2.79e-01 | 100.0% | 23.4% |
| 3830251 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.50 | 44.0 | 3.69e-01 | 100.0% | 65.3% |
| 4114333 | 2007.2.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins | 0.50 | 43.0 | 3.95e-01 | 98.9% | 85.4% |