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S2_006_000_R2_scaffold_44_prodigal-single.1__X__X__00264
Bact-VirS2_006_000_R2_scaffold_44_prodigal-single.1__X__X__00264
Identity
- Kingdom:
- phage
Quality
46.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-134
Domain cluster:
rep: NC_007623.1__YP_418148.1__PPEV_gp115__00115__D16-134
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bc9A01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 39.0 | 4.29e-01 | 70.6% | 77.4% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.59 | 42.0 | 4.30e-01 | 73.9% | 97.4% |
| 1w99A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 42.0 | 3.58e-01 | 73.9% | 88.0% |
| 1rgxA02 | 2.60.40.4230 | Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain | 0.58 | 32.0 | 3.99e-01 | 74.8% | 95.3% |
| 4indA03 | 2.60.120.1330 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 42.0 | 4.24e-01 | 77.3% | 95.8% |
| 4kq7A01 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.57 | 42.0 | 3.83e-01 | 77.3% | 85.8% |
| 4ag4A02 | 2.60.120.1190 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 3.60e-01 | 74.8% | 98.3% |
| 6cl5A01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 40.0 | 4.27e-01 | 74.8% | 91.2% |
| 1j3qB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 46.0 | 4.02e-01 | 93.3% | 65.6% |
| 3pv7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 4.06e-01 | 73.9% | 88.3% |
| 5zbeA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 36.0 | 3.78e-01 | 74.8% | 74.8% |
| 1w9yA00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.53 | 41.0 | 3.12e-01 | 82.4% | 54.4% |
| 2mizA00 | 2.60.40.2900 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 3.74e-01 | 80.7% | 92.9% |
| 5dj7A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 40.0 | 4.17e-01 | 91.6% | 88.0% |
| 1sefA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 35.0 | 3.43e-01 | 76.5% | 63.4% |
| 2xlgA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 41.0 | 3.42e-01 | 91.6% | 68.6% |
| 4mgqA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 40.0 | 3.78e-01 | 95.8% | 69.8% |
| 2vecA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 35.0 | 3.47e-01 | 74.8% | 68.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035178 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.64 | 45.0 | 4.65e-01 | 72.3% | 87.3% |
| 1720475 | 10.2.1.25 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_SCP | 0.59 | 44.0 | 3.73e-01 | 78.2% | 86.2% |
| 3389168 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.57 | 44.0 | 3.73e-01 | 83.2% | 63.9% |
| 1070876 | 10.2.1.89 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 | 0.57 | 42.0 | 3.82e-01 | 77.3% | 85.3% |
| 3713297 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.56 | 39.0 | 4.18e-01 | 72.3% | 93.3% |
| 3222667 | 387.1.1.69 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › DUF7808 | 0.55 | 45.0 | 4.28e-01 | 89.9% | 100.0% |
| 3671864 | 10.32.1.76 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_gal-bd | 0.54 | 35.0 | 3.68e-01 | 75.6% | 73.3% |
| 5026683 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.54 | 38.0 | 3.83e-01 | 80.7% | 71.7% |
| 4626412 | 10.32.1.238 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 | 0.53 | 44.0 | 4.19e-01 | 88.2% | 100.0% |
| 3240481 | 10.32.1.172 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DDR1-2_DS-like | 0.52 | 41.0 | 3.67e-01 | 89.9% | 58.8% |
| 4091603 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.52 | 37.0 | 3.16e-01 | 74.8% | 72.2% |
| 3202813 | 10.32.1.246 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PalB_C | 0.52 | 42.0 | 3.99e-01 | 86.6% | 95.0% |
| 3705435 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.51 | 39.0 | 4.13e-01 | 84.0% | 91.4% |
| 3970207 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 40.0 | 4.20e-01 | 85.7% | 92.4% |
| 4943488 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 43.0 | 4.03e-01 | 99.2% | 75.2% |
| 3860289 | 11.1.1.297 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 | 0.51 | 45.0 | 4.19e-01 | 100.0% | 80.6% |
| 3583804 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.51 | 44.0 | 3.94e-01 | 100.0% | 86.7% |
D2
high
residues 417-468
D3
medium
residues 152-219
D4
medium
residues 282-416
Domain cluster:
rep: S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00142__D285-393
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 38.0 | 3.81e-01 | 70.4% | 63.0% |
| 7cu8E01 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.56 | 42.0 | 3.77e-01 | 77.0% | 76.4% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 32.0 | 3.26e-01 | 70.4% | 56.0% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 35.0 | 3.24e-01 | 85.2% | 55.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3462336 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 39.0 | 3.85e-01 | 76.3% | 53.8% |
| 5025577 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.57 | 38.0 | 3.73e-01 | 71.1% | 62.8% |
| 2771892 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.56 | 41.0 | 3.67e-01 | 77.0% | 72.0% |
| 3487199 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 33.0 | 3.67e-01 | 75.6% | 76.9% |
| 4363149 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 40.0 | 2.49e-01 | 80.7% | 19.1% |
| 3587070 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 40.0 | 3.90e-01 | 79.3% | 89.0% |
| 5000298 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.51 | 40.0 | 3.57e-01 | 83.0% | 99.0% |
D5
medium
residues 565-745
D6
medium
residues 778-810_827-863