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S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00083

Bact-Vir

S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00083

Identity

Kingdom:
phage

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.67 38.0 3.46e-01 77.3% 42.2%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.63 51.0 3.41e-01 92.0% 31.4%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 47.0 4.88e-01 81.3% 88.4%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.61 51.0 3.39e-01 96.0% 31.4%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.61 54.0 5.12e-01 98.7% 83.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.61 47.0 4.42e-01 84.0% 93.6%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.61 49.0 3.42e-01 92.0% 31.2%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 4.29e-01 81.3% 75.3%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.60 44.0 4.61e-01 93.3% 89.4%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.60 45.0 3.18e-01 81.3% 34.0%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 4.14e-01 74.7% 71.1%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 4.42e-01 85.3% 84.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.79e-01 89.3% 95.2%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.71e-01 80.0% 76.2%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.69e-01 89.3% 96.8%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 46.0 3.19e-01 88.0% 64.3%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.57 49.0 4.63e-01 98.7% 89.5%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 2.90e-01 88.0% 42.0%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.93e-01 81.3% 78.6%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 4.10e-01 82.7% 76.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 42.0 4.54e-01 88.0% 100.0%
1qqgA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.88e-01 81.3% 77.9%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.57 47.0 3.02e-01 92.0% 35.6%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 40.0 2.85e-01 74.7% 58.1%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 45.0 3.44e-01 88.0% 78.3%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.63e-01 82.7% 80.7%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 45.0 3.55e-01 88.0% 75.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.53e-01 89.3% 95.2%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.90e-01 81.3% 76.0%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.56 42.0 3.87e-01 84.0% 78.3%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.61e-01 86.7% 95.8%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 37.0 3.93e-01 70.7% 77.3%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 48.0 4.25e-01 100.0% 97.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.82e-01 82.7% 67.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.35e-01 89.3% 90.9%
3bh0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.03e-01 89.3% 82.0%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 3.70e-01 74.7% 81.3%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 42.0 4.50e-01 89.3% 100.0%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.69e-01 81.3% 79.2%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 3.95e-01 86.7% 79.4%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.54 41.0 3.40e-01 82.7% 77.3%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 36.0 4.05e-01 74.7% 100.0%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 3.51e-01 97.3% 62.8%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.54 46.0 3.15e-01 98.7% 55.8%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.48e-01 81.3% 85.4%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 35.0 3.98e-01 80.0% 100.0%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.64e-01 93.3% 76.4%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 35.0 3.90e-01 72.0% 100.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 44.0 4.24e-01 93.3% 87.6%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.68e-01 78.7% 80.2%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.54e-01 81.3% 69.4%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.29e-01 73.3% 100.0%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.93e-01 78.7% 94.1%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 38.0 3.57e-01 77.3% 93.5%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 4.34e-01 89.3% 98.6%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.28e-01 81.3% 74.4%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 33.0 3.78e-01 78.7% 98.0%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 34.0 3.61e-01 74.7% 82.8%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 40.0 2.89e-01 92.0% 97.6%
6k3lB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 3.31e-01 72.0% 70.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4274345 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.75 51.0 3.60e-01 70.7% 80.4%
4059013 5.1.4.481 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR, Sortilin-Vps10 0.72 60.0 3.31e-01 90.7% 10.2%
4013580 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 53.0 4.68e-01 85.3% 89.1%
3839226 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.65 47.0 3.37e-01 77.3% 78.7%
None — 0.63 47.0 4.26e-01 81.3% 66.7%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.85e-01 85.3% 96.4%
3821886 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 49.0 5.00e-01 100.0% 86.7%
3896484 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.61 45.0 3.97e-01 81.3% 65.8%
3493400 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 45.0 4.12e-01 81.3% 68.6%
3476535 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 45.0 3.79e-01 81.3% 56.3%
4027836 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.60 45.0 3.67e-01 81.3% 59.3%
4351616 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.60 43.0 3.75e-01 76.0% 65.0%
3262323 220.1.1.21 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.60 42.0 3.59e-01 76.0% 53.3%
3495619 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.60 45.0 4.04e-01 82.7% 61.8%
3497738 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 44.0 3.72e-01 81.3% 52.3%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 44.0 4.72e-01 90.7% 92.3%
3625333 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.61e-01 81.3% 76.6%
1877235 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.59 44.0 4.20e-01 82.7% 78.9%
3636285 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.58 44.0 4.64e-01 81.3% 98.5%
3655368 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 50.0 5.08e-01 92.0% 94.7%
3300116 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.58 43.0 3.94e-01 81.3% 71.4%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.58 40.0 4.17e-01 72.0% 84.3%
3927127 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 3.49e-01 81.3% 72.3%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 4.68e-01 98.7% 95.4%
3936580 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.30e-01 78.7% 65.3%
4336488 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 49.0 5.07e-01 97.3% 100.0%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 43.0 4.62e-01 89.3% 92.3%
3513280 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.58 44.0 4.03e-01 82.7% 65.0%
3502711 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 43.0 3.79e-01 81.3% 72.2%
3225056 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 3.83e-01 81.3% 71.8%
3848267 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 42.0 3.55e-01 78.7% 59.2%
4359254 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 49.0 4.98e-01 97.3% 97.3%
3212968 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 43.0 3.62e-01 82.7% 74.8%
3929330 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.57 42.0 3.66e-01 82.7% 73.1%
3929366 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 42.0 3.86e-01 82.7% 69.5%
3578918 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 43.0 3.58e-01 82.7% 47.4%
3913725 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 41.0 3.54e-01 78.7% 64.8%
3248060 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.56 42.0 3.80e-01 82.7% 74.5%
3392308 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 41.0 3.91e-01 81.3% 77.9%
3536490 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 41.0 3.60e-01 81.3% 68.0%
3476018 220.1.1.155 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.56 41.0 3.62e-01 82.7% 61.8%
3629551 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 40.0 3.41e-01 81.3% 77.1%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.85e-01 81.3% 73.7%
3472562 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 41.0 3.67e-01 81.3% 72.7%
5071331 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.97e-01 82.7% 71.8%
3214387 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.87e-01 81.3% 84.4%
3912125 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.54 41.0 3.77e-01 81.3% 74.0%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.93e-01 74.7% 73.3%
3257910 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.39e-01 82.7% 57.1%
3737804 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.54 40.0 3.67e-01 82.7% 70.5%
3668547 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.54 45.0 3.18e-01 93.3% 81.2%
3935357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.50e-01 81.3% 60.8%
3398400 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.54 39.0 3.48e-01 81.3% 68.3%
4322675 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.54 40.0 3.58e-01 81.3% 60.9%
3475799 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.53 38.0 3.38e-01 80.0% 60.8%
3894031 330.1.1.6 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.53 44.0 4.23e-01 93.3% 80.0%
3392597 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 40.0 3.34e-01 81.3% 62.2%
3214958 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 38.0 2.66e-01 76.0% 75.6%
4948812 2003.1.2.297 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.52 39.0 2.52e-01 82.7% 46.4%
3408236 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.52 38.0 3.36e-01 82.7% 63.2%
5061515 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.51e-01 82.7% 86.7%
4026222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.52e-01 96.0% 60.0%