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S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00095
Bact-VirS2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00095
Identity
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-125
Domain cluster:
rep: CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00273__D14-121
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kg2A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.78 | 68.0 | 6.82e-01 | 99.1% | 92.0% |
| 1ornA01 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.78 | 67.0 | 6.74e-01 | 99.1% | 92.0% |
| 1keaA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.74 | 64.0 | 6.37e-01 | 99.1% | 91.2% |
| 2bgwA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.74 | 38.0 | 4.64e-01 | 99.1% | 75.7% |
| 6ig5A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.61 | 54.0 | 5.05e-01 | 99.1% | 87.0% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.59 | 35.0 | 4.04e-01 | 75.7% | 84.2% |
| 6k6iA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 47.0 | 3.84e-01 | 92.8% | 64.8% |
| 1vinA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 41.0 | 3.89e-01 | 100.0% | 65.5% |
| 1at9A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 44.0 | 3.57e-01 | 92.8% | 61.7% |
| 2z15A00 | 3.90.640.90 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain | 0.53 | 46.0 | 4.57e-01 | 97.3% | 95.8% |
| 1jgcA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 38.0 | 3.45e-01 | 75.7% | 71.2% |
| 1u7gA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.53 | 41.0 | 2.94e-01 | 84.7% | 68.9% |
| 2fq3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 4.07e-01 | 73.9% | 98.8% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 38.0 | 3.52e-01 | 76.6% | 79.9% |
| 1nthA00 | 3.20.20.460 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Monomethylamine methyltransferase MtmB | 0.52 | 42.0 | 2.83e-01 | 88.3% | 42.0% |
| 2zcxA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 39.0 | 3.30e-01 | 82.0% | 62.0% |
| 3p5nA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.51 | 44.0 | 3.87e-01 | 95.5% | 82.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3723417 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.77 | 71.0 | 5.38e-01 | 100.0% | 49.4% |
| 5036201 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.76 | 70.0 | 5.50e-01 | 100.0% | 50.5% |
| 3729240 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.64 | 53.0 | 5.11e-01 | 91.0% | 86.9% |
| 3367300 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.54 | 40.0 | 3.60e-01 | 100.0% | 55.0% |
| 5053358 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 37.0 | 3.64e-01 | 71.2% | 76.8% |
| 4038838 | 102.1.1.104 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, HHH_2, HHH_5 | 0.53 | 42.0 | 3.66e-01 | 84.7% | 82.4% |
| 3749743 | 4072.1.1.1 ↗ | a+b complex topology › BTG domain-like › BTG domain-like › BTG domain-like › BTG | 0.53 | 46.0 | 4.35e-01 | 100.0% | 84.3% |
| 4620542 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 45.0 | 3.23e-01 | 94.6% | 59.1% |
| 3627726 | 5059.1.1.11 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM144 | 0.52 | 36.0 | 3.55e-01 | 71.2% | 96.7% |
| 3512795 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.52 | 41.0 | 3.67e-01 | 100.0% | 59.4% |
| 3831998 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.52 | 37.0 | 3.63e-01 | 75.7% | 74.4% |
| 4264622 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.51 | 43.0 | 3.73e-01 | 95.5% | 77.6% |
| 3967387 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.51 | 35.0 | 2.69e-01 | 71.2% | 53.5% |
| 4144025 | 129.1.1.9 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_Gly3P_dh_C | 0.50 | 45.0 | 4.02e-01 | 98.2% | 80.0% |
| 3284420 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.50 | 35.0 | 2.68e-01 | 71.2% | 52.7% |
D2
high
residues 131-174
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7x4oB01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.64 | 51.0 | 3.92e-01 | 93.2% | 79.3% |
| 4yi7A02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.60 | 47.0 | 3.05e-01 | 100.0% | 93.8% |
| 3crvA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 44.0 | 2.92e-01 | 100.0% | 18.3% |
| 4ou7A00 | 1.10.8.1180 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 43.0 | 3.88e-01 | 95.5% | 78.9% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.55 | 42.0 | 4.02e-01 | 93.2% | 83.6% |
| 1m3sB00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.53 | 45.0 | 3.05e-01 | 100.0% | 80.3% |
| 3fcnA00 | 1.20.1220.20 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Uncharcterised protein PF01724 | 0.52 | 37.0 | 2.66e-01 | 79.5% | 88.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3512653 | 130.1.1.2 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM | 0.72 | 61.0 | 5.78e-01 | 100.0% | 87.3% |
| 4980755 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.60 | 45.0 | 3.24e-01 | 86.4% | 87.1% |
| 3800834 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.58 | 40.0 | 3.19e-01 | 77.3% | 38.1% |
| 3273440 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.57 | 43.0 | 3.56e-01 | 100.0% | 53.3% |
| 3568558 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.56 | 44.0 | 4.09e-01 | 93.2% | 65.0% |
| 3748435 | 105.1.1.4 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › bZIP_1 | 0.55 | 39.0 | 3.21e-01 | 81.8% | 37.0% |
| 4110198 | 103.14.1.1 ↗ | alpha arrays › RuvA-C › DnaT DNA-binding domain › DnaT DNA-binding domain › DnaT | 0.55 | 42.0 | 3.50e-01 | 95.5% | 59.6% |
| 185242 | 3496.1.1.1 ↗ | alpha bundles › alpha-helical protein of unknown function (Pfam01724) › alpha-helical protein of unknown function (Pfam01724) › alpha-helical protein of unknown function (Pfam01724) › DUF29 | 0.52 | 37.0 | 2.66e-01 | 79.5% | 88.0% |