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S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00096
Bact-VirS2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00096
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-118
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 61.0 | 4.83e-01 | 100.0% | 43.0% |
| 3ifvC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.76 | 65.0 | 5.08e-01 | 100.0% | 45.0% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 62.0 | 5.26e-01 | 100.0% | 55.4% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.72 | 63.0 | 4.90e-01 | 100.0% | 45.1% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.72 | 62.0 | 6.37e-01 | 100.0% | 97.3% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.72 | 62.0 | 6.37e-01 | 100.0% | 97.3% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.71 | 64.0 | 6.22e-01 | 99.2% | 88.5% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.70 | 62.0 | 5.46e-01 | 96.6% | 72.0% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.70 | 60.0 | 5.94e-01 | 100.0% | 87.9% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.70 | 64.0 | 6.31e-01 | 100.0% | 95.2% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.69 | 63.0 | 4.85e-01 | 100.0% | 45.3% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.69 | 60.0 | 4.74e-01 | 97.5% | 46.6% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.68 | 62.0 | 4.80e-01 | 100.0% | 47.1% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.68 | 59.0 | 5.89e-01 | 100.0% | 91.7% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.68 | 61.0 | 4.69e-01 | 100.0% | 48.7% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.68 | 62.0 | 4.81e-01 | 100.0% | 47.0% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.67 | 59.0 | 4.66e-01 | 100.0% | 46.5% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.66 | 60.0 | 5.83e-01 | 100.0% | 90.6% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.66 | 58.0 | 4.58e-01 | 100.0% | 47.1% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.65 | 59.0 | 5.76e-01 | 100.0% | 91.6% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.62 | 41.0 | 4.36e-01 | 97.5% | 76.7% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 34.0 | 3.30e-01 | 96.6% | 51.4% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 40.0 | 3.60e-01 | 81.4% | 99.4% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 40.0 | 4.11e-01 | 100.0% | 86.5% |
| 3eo4D00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 34.0 | 3.07e-01 | 100.0% | 49.4% |
| 3s8zA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 38.0 | 2.90e-01 | 83.1% | 92.7% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059299 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 66.0 | 6.64e-01 | 100.0% | 91.7% |
| 4939065 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.75 | 66.0 | 6.58e-01 | 100.0% | 91.7% |
| 4980359 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.75 | 65.0 | 6.55e-01 | 100.0% | 91.7% |
| 1871497 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.75 | 62.0 | 6.25e-01 | 99.2% | 88.2% |
| 5039026 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.73 | 62.0 | 6.22e-01 | 100.0% | 89.2% |
| 3719143 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 66.0 | 6.33e-01 | 100.0% | 90.4% |
| 3804177 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.72 | 66.0 | 6.17e-01 | 100.0% | 95.2% |
| 4936049 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.72 | 62.0 | 6.25e-01 | 100.0% | 91.7% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.72 | 62.0 | 6.20e-01 | 100.0% | 89.4% |
| 4995027 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.72 | 63.0 | 6.21e-01 | 100.0% | 88.8% |
| 3478161 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.72 | 65.0 | 6.25e-01 | 100.0% | 93.3% |
| 4047098 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.71 | 63.0 | 6.33e-01 | 100.0% | 94.2% |
| 4542774 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.71 | 61.0 | 6.11e-01 | 96.6% | 90.8% |
| 143428 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.71 | 60.0 | 6.05e-01 | 100.0% | 90.0% |
| 162047 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.71 | 62.0 | 6.11e-01 | 100.0% | 89.0% |
| 3934036 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.71 | 64.0 | 6.42e-01 | 98.3% | 96.7% |
| 3743107 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.71 | 65.0 | 6.12e-01 | 100.0% | 92.9% |
| 5070586 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.71 | 63.0 | 6.25e-01 | 100.0% | 92.0% |
| 5056757 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.71 | 62.0 | 6.15e-01 | 100.0% | 90.4% |
| 4998585 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.71 | 61.0 | 6.12e-01 | 100.0% | 91.7% |
| 2878147 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.70 | 64.0 | 6.11e-01 | 100.0% | 85.4% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 64.0 | 6.07e-01 | 100.0% | 93.6% |
| 3785352 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 63.0 | 5.65e-01 | 100.0% | 88.5% |
| 3722114 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 63.0 | 5.77e-01 | 100.0% | 91.6% |
| 3623607 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 63.0 | 6.01e-01 | 100.0% | 89.3% |
| 3597091 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.70 | 62.0 | 6.11e-01 | 100.0% | 91.9% |
| 4941928 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.69 | 61.0 | 6.11e-01 | 100.0% | 94.2% |
| 3503503 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.69 | 63.0 | 5.91e-01 | 100.0% | 93.8% |
| 4943404 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.69 | 62.0 | 6.04e-01 | 100.0% | 89.2% |
| 3798354 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.69 | 63.0 | 6.04e-01 | 100.0% | 91.9% |
| 3397928 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.69 | 63.0 | 6.21e-01 | 100.0% | 96.0% |
| 5078494 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.69 | 61.0 | 6.01e-01 | 100.0% | 91.2% |
| 3782606 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.69 | 63.0 | 5.87e-01 | 100.0% | 86.2% |
| 3602548 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.69 | 61.0 | 6.01e-01 | 100.0% | 91.2% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.69 | 62.0 | 5.65e-01 | 100.0% | 75.3% |
| 1822927 | 227.1.1.2 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.69 | 63.0 | 5.63e-01 | 100.0% | 72.4% |
| 4987602 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.69 | 61.0 | 6.02e-01 | 100.0% | 92.0% |
| 3702817 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.68 | 63.0 | 6.02e-01 | 100.0% | 91.8% |
| 4057537 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.68 | 60.0 | 5.94e-01 | 100.0% | 90.4% |
| 4934001 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.68 | 62.0 | 6.14e-01 | 100.0% | 94.4% |
| 5052550 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.68 | 62.0 | 6.12e-01 | 100.0% | 94.4% |
| 309454 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.68 | 59.0 | 5.74e-01 | 100.0% | 85.6% |
| 3256904 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.68 | 62.0 | 6.07e-01 | 100.0% | 94.4% |
| 5010672 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.68 | 59.0 | 5.90e-01 | 100.0% | 94.2% |
| 167574 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.67 | 58.0 | 5.68e-01 | 100.0% | 85.5% |
| 3939755 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.67 | 61.0 | 5.65e-01 | 100.0% | 84.5% |
| 3997015 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.67 | 59.0 | 5.79e-01 | 97.5% | 87.7% |
| 3230925 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.67 | 61.0 | 5.90e-01 | 100.0% | 90.0% |
| 4172290 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.67 | 60.0 | 5.88e-01 | 100.0% | 90.0% |
| 5033948 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.67 | 58.0 | 5.70e-01 | 100.0% | 86.9% |
| 3598260 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.67 | 58.0 | 5.73e-01 | 94.9% | 92.0% |
| 3624708 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.67 | 60.0 | 5.75e-01 | 100.0% | 86.7% |
| 3613685 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.66 | 61.0 | 5.73e-01 | 100.0% | 90.7% |
| 4232371 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.66 | 58.0 | 5.79e-01 | 100.0% | 94.2% |
| 4956740 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.66 | 59.0 | 5.83e-01 | 100.0% | 92.0% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.66 | 60.0 | 5.56e-01 | 100.0% | 89.3% |
| 3719938 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.66 | 60.0 | 5.70e-01 | 100.0% | 90.0% |
| 3244229 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.66 | 58.0 | 5.73e-01 | 100.0% | 91.2% |
| 3625037 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.65 | 59.0 | 5.66e-01 | 100.0% | 91.1% |
| 3598259 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.64 | 58.0 | 5.60e-01 | 100.0% | 93.3% |
| 3596476 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.64 | 58.0 | 5.46e-01 | 100.0% | 92.3% |
| 3789625 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.64 | 58.0 | 5.55e-01 | 100.0% | 91.1% |
| 143267 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.63 | 55.0 | 5.46e-01 | 99.2% | 90.6% |
| 4263140 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.63 | 33.0 | 4.09e-01 | 96.6% | 82.9% |
| 327025 | 6048.1.1.1 ↗ | a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 | 0.63 | 41.0 | 4.37e-01 | 97.5% | 74.5% |
| 3952159 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.61 | 33.0 | 4.05e-01 | 96.6% | 82.7% |
| 5002020 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.57 | 31.0 | 3.17e-01 | 86.4% | 53.9% |
| 5019992 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.57 | 31.0 | 3.21e-01 | 86.4% | 54.8% |
| 5029736 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.55 | 36.0 | 3.56e-01 | 71.2% | 62.4% |
| 3609658 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.53 | 38.0 | 3.76e-01 | 75.4% | 93.8% |
| 3801954 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.50 | 42.0 | 3.06e-01 | 92.4% | 81.1% |
D2
high
residues 132-242
Domain cluster:
rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306