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S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00101

Bact-Vir

S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00101

Identity

Kingdom:
phage

Quality

61.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 6.50e-01 92.6% 92.5%
3l9wA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.77 55.0 3.85e-01 75.9% 35.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 63.0 5.65e-01 100.0% 65.4%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 66.0 5.41e-01 98.1% 57.6%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.76 66.0 5.01e-01 100.0% 41.7%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.76 67.0 4.99e-01 100.0% 44.0%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 5.84e-01 100.0% 78.8%
2vmaA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.71 62.0 4.73e-01 98.1% 49.2%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.74e-01 96.3% 94.4%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.76e-01 90.7% 83.9%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.69 48.0 3.71e-01 72.2% 55.9%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.68 48.0 4.04e-01 74.1% 48.5%
2k89A00 3.10.20.870 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain 0.68 51.0 4.58e-01 98.1% 56.2%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.68 57.0 4.65e-01 96.3% 59.6%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.67 53.0 4.59e-01 94.4% 54.5%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 5.33e-01 90.7% 100.0%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.67 53.0 4.22e-01 98.1% 40.6%
1r4aE00 1.10.220.60 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GRIP domain 0.66 44.0 4.57e-01 72.2% 74.5%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 57.0 4.45e-01 98.1% 86.3%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.64 55.0 4.85e-01 94.4% 86.1%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.63 52.0 4.47e-01 94.4% 88.6%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.63 46.0 3.91e-01 83.3% 46.3%
2ckwA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.62 51.0 4.13e-01 94.4% 46.7%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 51.0 4.16e-01 94.4% 48.1%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 52.0 4.69e-01 94.4% 74.7%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 45.0 4.68e-01 87.0% 97.9%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 50.0 4.52e-01 98.1% 79.7%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.60 51.0 4.24e-01 98.1% 54.0%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 50.0 3.94e-01 100.0% 54.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 45.0 4.47e-01 81.5% 79.3%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 50.0 3.88e-01 100.0% 44.8%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.60 48.0 4.46e-01 96.3% 84.0%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.60 50.0 3.67e-01 96.3% 54.1%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 53.0 4.20e-01 100.0% 82.7%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.59 50.0 3.13e-01 100.0% 23.1%
4a18Q01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.58 42.0 4.00e-01 83.3% 66.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 44.0 4.15e-01 90.7% 70.1%
3wirA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 47.0 2.87e-01 98.1% 99.2%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 47.0 4.28e-01 96.3% 80.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.54 40.0 3.92e-01 81.5% 75.4%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 45.0 4.06e-01 92.6% 83.8%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 38.0 3.76e-01 85.2% 70.5%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 41.0 3.73e-01 88.9% 79.5%
1np7A02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 43.0 3.46e-01 98.1% 48.7%
3ckcA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 43.0 3.10e-01 100.0% 64.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022086 101.1.1.539 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF434 0.91 71.0 7.63e-01 83.3% 100.0%
4189523 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 63.0 6.75e-01 87.0% 95.6%
4323683 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.84 76.0 5.91e-01 100.0% 49.1%
3391517 548.1.1.1 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.83 56.0 5.68e-01 72.2% 70.4%
4996152 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.82 69.0 5.85e-01 100.0% 56.7%
5077699 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.82 71.0 4.65e-01 100.0% 42.6%
5066323 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.81 64.0 4.21e-01 85.2% 42.9%
4169888 101.1.1.539 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF434 0.81 59.0 3.93e-01 77.8% 43.5%
3487676 548.1.1.0 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain 0.80 53.0 5.12e-01 72.2% 62.7%
4479187 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.79 71.0 6.66e-01 100.0% 84.6%
4934782 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.79 69.0 4.56e-01 100.0% 87.3%
3493041 3796.1.1.2 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › GRIP 0.79 52.0 5.09e-01 72.2% 63.8%
4995688 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 63.0 6.32e-01 88.9% 90.9%
5034762 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.78 66.0 4.97e-01 96.3% 39.3%
4036335 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.78 68.0 5.44e-01 100.0% 49.1%
3971692 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.78 70.0 5.28e-01 100.0% 66.4%
4390290 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.78 66.0 6.22e-01 100.0% 78.5%
3965372 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.77 62.0 4.84e-01 90.7% 42.5%
5075678 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.77 64.0 4.28e-01 94.4% 43.7%
4928682 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.77 68.0 5.14e-01 100.0% 65.6%
3520270 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.76 66.0 5.36e-01 100.0% 51.4%
4375034 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.76 58.0 5.81e-01 85.2% 85.5%
4434935 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.74 63.0 4.73e-01 98.1% 39.3%
4944767 101.1.2.883 ↗ alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.74 52.0 4.72e-01 81.5% 54.7%
5052346 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 61.0 5.98e-01 94.4% 85.0%
3283752 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.73 64.0 5.32e-01 98.1% 57.9%
166741 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.73 62.0 4.97e-01 100.0% 48.1%
5042980 101.35.1.41 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26555 0.73 57.0 5.87e-01 92.6% 98.0%
4949368 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 57.0 5.76e-01 98.1% 90.9%
3957876 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.70 57.0 5.14e-01 96.3% 66.3%
4240067 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.69 54.0 4.93e-01 96.3% 64.0%
4028650 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 51.0 4.98e-01 92.6% 73.3%
3840404 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.67 54.0 5.34e-01 98.1% 91.7%
3215991 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.27e-01 98.1% 84.6%
4952257 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.66 58.0 4.67e-01 98.1% 84.6%
3875282 109.4.1.953 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_1st 0.66 56.0 3.87e-01 100.0% 28.0%
4362035 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.65 56.0 3.94e-01 100.0% 91.9%
3196042 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.65 56.0 3.93e-01 96.3% 32.1%
3824693 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 53.0 3.46e-01 94.4% 86.9%
3890108 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.64 53.0 4.37e-01 100.0% 81.8%
3599912 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 51.0 4.89e-01 92.6% 83.1%
3737108 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.64 50.0 4.81e-01 90.7% 92.3%
3993676 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.63 53.0 4.39e-01 100.0% 51.4%
3242447 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 49.0 3.98e-01 85.2% 47.6%
4137468 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.62 53.0 3.71e-01 98.1% 93.5%
3938318 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.62 53.0 4.04e-01 92.6% 82.5%
3630157 109.3.1.26 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › SBF2 0.62 52.0 3.46e-01 100.0% 27.1%
3777242 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.61 50.0 4.06e-01 100.0% 48.3%
3707222 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 49.0 4.91e-01 98.1% 94.5%
3173846 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 3.40e-01 94.4% 31.9%
3495156 109.58.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.59 52.0 4.49e-01 100.0% 74.1%
4095914 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.57 49.0 4.37e-01 100.0% 76.2%
4160603 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.56 49.0 3.48e-01 100.0% 76.6%
3871543 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 49.0 3.62e-01 94.4% 51.5%
3872563 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.56 41.0 3.31e-01 81.5% 41.7%
3926730 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 44.0 3.70e-01 96.3% 48.6%
3245973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.46e-01 88.9% 41.6%
D2 high residues 75-182_200-234
PDB