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S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00103
Bact-VirS2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00103
Identity
- Kingdom:
- phage
Quality
94.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-127
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.77 | 58.0 | 6.09e-01 | 100.0% | 88.2% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 44.0 | 4.80e-01 | 100.0% | 79.0% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 51.0 | 5.37e-01 | 100.0% | 90.9% |
| 2mk5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 61.0 | 5.00e-01 | 100.0% | 61.8% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.66 | 47.0 | 5.06e-01 | 100.0% | 88.9% |
| 1m9sA04 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 56.0 | 5.40e-01 | 100.0% | 82.6% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 47.0 | 4.92e-01 | 100.0% | 92.6% |
| 2db9A01 | 3.90.70.200 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain | 0.59 | 45.0 | 3.70e-01 | 100.0% | 45.1% |
| 4fm4B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 53.0 | 4.78e-01 | 100.0% | 81.2% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 46.0 | 4.31e-01 | 89.3% | 95.9% |
| 4kc7A02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 46.0 | 4.28e-01 | 92.0% | 96.0% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.57 | 42.0 | 3.46e-01 | 82.7% | 73.4% |
| 2dt4A00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.56 | 48.0 | 3.97e-01 | 100.0% | 51.0% |
| 2lkoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 46.0 | 3.90e-01 | 96.0% | 76.8% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 43.0 | 4.42e-01 | 84.0% | 100.0% |
| 3wyfE00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 47.0 | 3.88e-01 | 96.0% | 64.8% |
| 2basA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 45.0 | 3.89e-01 | 90.7% | 82.8% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 46.0 | 4.00e-01 | 96.0% | 88.1% |
| 1f98A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 45.0 | 3.86e-01 | 94.7% | 93.6% |
| 2yh6D00 | 3.30.530.50 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.53 | 41.0 | 3.64e-01 | 84.0% | 70.9% |
| 2ewvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 41.0 | 3.75e-01 | 85.3% | 82.4% |
| 4uxuA00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.52 | 39.0 | 2.90e-01 | 82.7% | 82.9% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 41.0 | 3.62e-01 | 93.3% | 83.9% |
| 6g1yA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 42.0 | 3.66e-01 | 93.3% | 95.8% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 34.0 | 3.42e-01 | 90.7% | 65.8% |
| 4lrzE02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 39.0 | 3.68e-01 | 84.0% | 93.6% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 39.0 | 3.87e-01 | 96.0% | 78.5% |
| 5amhA00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.50 | 44.0 | 3.97e-01 | 98.7% | 97.2% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1545880 | 4.1.1.278 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd | 0.77 | 58.0 | 5.72e-01 | 100.0% | 75.0% |
| 5052256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 47.0 | 4.37e-01 | 100.0% | 61.1% |
| 3621439 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 55.0 | 4.97e-01 | 100.0% | 97.0% |
| 4386715 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.61 | 53.0 | 5.17e-01 | 100.0% | 87.1% |
| 3217617 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.58 | 50.0 | 4.28e-01 | 97.3% | 89.6% |
| 3486056 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 49.0 | 3.95e-01 | 96.0% | 84.1% |
| 4930437 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.57 | 46.0 | 4.18e-01 | 89.3% | 88.6% |
| 4938400 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.57 | 48.0 | 4.25e-01 | 96.0% | 91.3% |
| 3817655 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.57 | 47.0 | 4.10e-01 | 100.0% | 57.6% |
| 4964696 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.57 | 46.0 | 4.11e-01 | 93.3% | 87.0% |
| 4030846 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.57 | 47.0 | 3.98e-01 | 100.0% | 53.3% |
| 4980674 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 44.0 | 3.88e-01 | 84.0% | 90.0% |
| 3905418 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 47.0 | 4.01e-01 | 96.0% | 80.8% |
| 4956582 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 46.0 | 3.96e-01 | 93.3% | 87.2% |
| 3973221 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.56 | 44.0 | 3.73e-01 | 86.7% | 78.5% |
| 4055111 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.56 | 51.0 | 4.27e-01 | 100.0% | 61.6% |
| 4949986 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.56 | 47.0 | 4.23e-01 | 96.0% | 90.9% |
| 4951355 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.56 | 43.0 | 2.99e-01 | 85.3% | 36.4% |
| 2529893 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.56 | 43.0 | 4.45e-01 | 85.3% | 100.0% |
| 5013239 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.55 | 45.0 | 4.06e-01 | 93.3% | 92.7% |
| 3271575 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 46.0 | 3.73e-01 | 96.0% | 75.5% |
| 3607454 | 220.1.1.306 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_22 | 0.55 | 45.0 | 4.17e-01 | 94.7% | 94.0% |
| 3452440 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 46.0 | 4.09e-01 | 97.3% | 81.7% |
| 3255737 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.55 | 48.0 | 4.15e-01 | 100.0% | 66.7% |
| 3667340 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.55 | 44.0 | 3.85e-01 | 93.3% | 91.2% |
| 3281007 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 46.0 | 3.78e-01 | 98.7% | 61.3% |
| 3464620 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 38.0 | 4.04e-01 | 100.0% | 87.7% |
| 3974697 | 1.16.1.4 ↗ | beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I › T6SS_TssF | 0.54 | 37.0 | 3.72e-01 | 100.0% | 70.7% |
| 5025053 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 45.0 | 3.80e-01 | 96.0% | 76.3% |
| 4998126 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.54 | 40.0 | 3.85e-01 | 78.7% | 98.8% |
| 3750304 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 44.0 | 3.86e-01 | 94.7% | 82.5% |
| 4522783 | 101.1.2.715 ↗ | alpha arrays › HTH › HTH › winged helix domain › CheF-arch | 0.54 | 44.0 | 3.10e-01 | 96.0% | 34.3% |
| 3939365 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.53 | 43.0 | 3.82e-01 | 96.0% | 80.0% |
| 3928662 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.53 | 42.0 | 3.23e-01 | 88.0% | 91.4% |
| 3933904 | 5.1.4.333 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF31099 | 0.53 | 43.0 | 2.69e-01 | 90.7% | 99.8% |
| 3772335 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.53 | 45.0 | 3.72e-01 | 94.7% | 63.7% |
| 4964699 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.53 | 42.0 | 3.95e-01 | 93.3% | 94.0% |
| 3676791 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 40.0 | 4.10e-01 | 86.7% | 88.0% |
| 3445705 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 39.0 | 4.02e-01 | 82.7% | 91.4% |
| 4958725 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.52 | 42.0 | 3.58e-01 | 89.3% | 76.8% |
| 3504767 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.52 | 41.0 | 4.24e-01 | 92.0% | 100.0% |
| 4021196 | 270.1.1.0 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related | 0.52 | 40.0 | 3.37e-01 | 86.7% | 74.1% |
| 3598219 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 44.0 | 3.76e-01 | 97.3% | 88.0% |
| None | — | 0.51 | 41.0 | 2.59e-01 | 89.3% | 90.3% | |
| 3619357 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 42.0 | 3.45e-01 | 96.0% | 75.5% |
| 4978913 | 1.1.9.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 | 0.51 | 35.0 | 3.62e-01 | 86.7% | 75.7% |
| 3299024 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.51 | 42.0 | 3.34e-01 | 96.0% | 78.9% |
| 3493588 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.51 | 43.0 | 3.51e-01 | 94.7% | 64.8% |
| 3576376 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.51 | 33.0 | 2.37e-01 | 90.7% | 19.6% |
| 3188457 | 3335.1.1.0 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B | 0.51 | 38.0 | 3.75e-01 | 84.0% | 91.8% |
| 3225530 | 5.1.4.56 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 | 0.50 | 40.0 | 2.54e-01 | 89.3% | 91.9% |