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S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00146
Bact-VirS2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00146
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-102
Domain cluster:
rep: S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00338__D14-94
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.74 | 49.0 | 5.44e-01 | 88.7% | 86.7% |
| 4gn1C02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.69 | 38.0 | 3.26e-01 | 99.0% | 35.3% |
| 3en9A03 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.66 | 48.0 | 5.38e-01 | 88.7% | 100.0% |
| 2crlA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 40.0 | 4.56e-01 | 81.4% | 85.5% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 40.0 | 4.53e-01 | 79.4% | 83.3% |
| 1vw4700 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.64 | 48.0 | 4.66e-01 | 100.0% | 72.6% |
| 1zarA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 44.0 | 4.71e-01 | 93.8% | 87.7% |
| 1whxA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 41.0 | 3.93e-01 | 91.8% | 58.6% |
| 4v1al00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.61 | 46.0 | 4.19e-01 | 100.0% | 59.4% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 43.0 | 4.54e-01 | 90.7% | 82.8% |
| 1r8gA00 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.60 | 53.0 | 3.65e-01 | 100.0% | 66.5% |
| 3hheA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 43.0 | 4.73e-01 | 92.8% | 97.4% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.58 | 37.0 | 4.02e-01 | 82.5% | 79.5% |
| 4oevA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.57 | 48.0 | 4.53e-01 | 100.0% | 75.7% |
| 1ir3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 41.0 | 4.22e-01 | 89.7% | 80.0% |
| 1xocA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.56 | 47.0 | 4.39e-01 | 100.0% | 75.0% |
| 4e9jB01 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.55 | 47.0 | 4.21e-01 | 93.8% | 94.9% |
| 2grvA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.55 | 47.0 | 4.48e-01 | 100.0% | 80.5% |
| 3byqA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.54 | 44.0 | 3.57e-01 | 88.7% | 85.9% |
| 4pfyA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.53 | 47.0 | 4.17e-01 | 100.0% | 67.3% |
| 6i3gA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.53 | 47.0 | 4.46e-01 | 100.0% | 85.6% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.53 | 40.0 | 3.59e-01 | 81.4% | 69.9% |
| 2d5wA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.53 | 47.0 | 4.45e-01 | 100.0% | 94.0% |
| 1vkvA01 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.53 | 47.0 | 3.87e-01 | 100.0% | 70.0% |
| 4fajA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.53 | 47.0 | 4.36e-01 | 100.0% | 95.2% |
| 4onyA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 46.0 | 3.26e-01 | 100.0% | 31.9% |
| 1zu0A02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.52 | 46.0 | 4.50e-01 | 100.0% | 94.4% |
| 5yxkA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 4.05e-01 | 99.0% | 79.1% |
| 3anoA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.51 | 45.0 | 3.88e-01 | 100.0% | 80.4% |
| 2gu0A02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.51 | 35.0 | 3.06e-01 | 86.6% | 44.7% |
| 1gupB01 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.51 | 45.0 | 3.78e-01 | 100.0% | 80.0% |
| 3f6kA02 | 2.10.70.80 | Mainly Beta › Ribbon › Complement Module; domain 1 › Sortilin Vps10-D, 10CC-a domain | 0.50 | 28.0 | 3.38e-01 | 89.7% | 91.2% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4926952 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.73 | 42.0 | 4.91e-01 | 81.4% | 80.0% |
| 3252797 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.70 | 40.0 | 3.87e-01 | 100.0% | 50.0% |
| 3217858 | 220.1.1.37 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 | 0.69 | 39.0 | 3.07e-01 | 99.0% | 27.9% |
| 5053407 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.68 | 49.0 | 5.14e-01 | 81.4% | 81.1% |
| 3784880 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.67 | 45.0 | 4.73e-01 | 79.4% | 77.6% |
| 5012700 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.66 | 42.0 | 4.51e-01 | 97.9% | 74.1% |
| 3966305 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.64 | 42.0 | 4.66e-01 | 79.4% | 86.7% |
| 3801461 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 37.0 | 3.10e-01 | 100.0% | 34.5% |
| 3651060 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.63 | 48.0 | 3.87e-01 | 81.4% | 72.1% |
| 4286724 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.63 | 57.0 | 4.08e-01 | 100.0% | 60.6% |
| 3736057 | 306.3.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 | 0.63 | 49.0 | 4.49e-01 | 100.0% | 63.1% |
| 4114985 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.61 | 48.0 | 4.92e-01 | 95.9% | 87.4% |
| 3711961 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.61 | 56.0 | 4.61e-01 | 100.0% | 83.5% |
| 4967029 | 304.136.1.0 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain | 0.59 | 47.0 | 4.74e-01 | 100.0% | 86.0% |
| 3477882 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 36.0 | 3.04e-01 | 100.0% | 37.5% |
| 3644246 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 40.0 | 4.27e-01 | 79.4% | 87.5% |
| 3401419 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 51.0 | 3.47e-01 | 100.0% | 40.6% |
| 3273458 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 51.0 | 3.08e-01 | 100.0% | 22.1% |
| 3986582 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.56 | 42.0 | 3.85e-01 | 79.4% | 86.2% |
| 3199364 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.56 | 50.0 | 3.53e-01 | 100.0% | 51.9% |
| 5024608 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.56 | 49.0 | 4.91e-01 | 100.0% | 95.0% |
| 3603159 | 101.1.2.209 ↗ | alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd | 0.55 | 33.0 | 3.70e-01 | 100.0% | 80.0% |
| 3183863 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 43.0 | 4.46e-01 | 89.7% | 91.1% |
| 4108957 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.54 | 46.0 | 3.99e-01 | 100.0% | 59.4% |
| 3614830 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 47.0 | 3.37e-01 | 96.9% | 54.5% |
| 135738 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.53 | 47.0 | 4.20e-01 | 100.0% | 83.6% |
| 1546301 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.53 | 47.0 | 4.33e-01 | 100.0% | 85.9% |
| 3496279 | 206.1.2.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin | 0.53 | 47.0 | 3.02e-01 | 100.0% | 87.8% |
| 3973859 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.53 | 47.0 | 4.12e-01 | 100.0% | 83.4% |
| 1514558 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.53 | 46.0 | 4.55e-01 | 100.0% | 98.1% |
| 3956447 | 304.136.1.0 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain | 0.52 | 47.0 | 4.48e-01 | 100.0% | 88.7% |
| 3281648 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.52 | 46.0 | 4.50e-01 | 100.0% | 99.0% |
| 3022630 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 47.0 | 3.51e-01 | 100.0% | 60.2% |
| 5001580 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.52 | 45.0 | 4.23e-01 | 100.0% | 88.8% |
| 5049501 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.52 | 45.0 | 4.16e-01 | 100.0% | 96.2% |
| 4090346 | 101.1.2.209 ↗ | alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd | 0.51 | 28.0 | 3.32e-01 | 91.8% | 81.7% |
| 4994408 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.51 | 43.0 | 2.82e-01 | 94.8% | 26.0% |
| 3283324 | 241.11.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF6194 | 0.51 | 45.0 | 3.96e-01 | 100.0% | 84.7% |
| 4971261 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.50 | 44.0 | 3.86e-01 | 100.0% | 88.7% |
| 3421524 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 34.0 | 2.30e-01 | 70.1% | 37.0% |