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S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00223

Bact-Vir

S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00223

Identity

Kingdom:
phage

Quality

83.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-178
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.80 39.0 5.02e-01 80.7% 79.3%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 39.0 5.25e-01 73.8% 90.9%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.77 39.0 5.04e-01 78.6% 85.4%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 50.0 5.85e-01 93.1% 96.1%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 43.0 4.05e-01 80.7% 48.2%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.73 26.0 3.64e-01 71.7% 63.5%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.72 44.0 5.33e-01 94.5% 90.7%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.70 41.0 4.84e-01 93.8% 82.4%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.70 41.0 4.75e-01 93.8% 79.2%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 44.0 4.96e-01 94.5% 84.3%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.69 45.0 4.94e-01 95.9% 81.0%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 40.0 4.95e-01 80.0% 91.1%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 33.0 4.40e-01 77.2% 82.9%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 43.0 4.95e-01 95.9% 86.7%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.68 31.0 3.45e-01 95.9% 53.5%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 40.0 4.27e-01 95.9% 66.9%
2l6hA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.67 37.0 3.66e-01 80.7% 49.4%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 53.0 4.95e-01 94.5% 69.4%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.65 48.0 5.00e-01 93.8% 82.7%
1eq1A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.64 45.0 4.29e-01 71.0% 77.1%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 41.0 4.92e-01 80.0% 97.0%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 39.0 4.27e-01 96.6% 76.3%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 35.0 4.45e-01 71.0% 96.5%
6yttA01 1.10.8.190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 0.61 32.0 3.89e-01 73.1% 76.0%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 33.0 4.20e-01 83.4% 96.2%
1xioA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 42.0 3.66e-01 71.0% 59.4%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 41.0 4.10e-01 71.7% 95.3%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 36.0 3.56e-01 95.2% 59.2%
1n83A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 47.0 3.96e-01 91.7% 78.1%
2yguC00 1.10.238.190 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.56 28.0 3.08e-01 71.0% 56.8%
2hydA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.55 49.0 3.68e-01 93.1% 41.5%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 30.0 3.24e-01 89.7% 58.7%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.55 42.0 3.31e-01 78.6% 50.2%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 40.0 3.70e-01 79.3% 61.3%
3mgxB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 45.0 3.28e-01 89.7% 65.7%
4im0A04 1.20.1270.420 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 42.0 3.46e-01 81.4% 49.2%
5yixA00 1.10.601.10 Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor 0.53 49.0 3.75e-01 99.3% 99.7%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 49.0 4.46e-01 99.3% 91.1%
4k5yA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 39.0 3.31e-01 97.9% 45.2%
3kraC00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 39.0 3.14e-01 77.9% 66.8%
3zevB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 45.0 3.50e-01 95.9% 65.8%
2onkC00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.50 36.0 2.99e-01 73.1% 90.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500243 1008.1.1.74 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CC_Cfap43 0.82 47.0 4.85e-01 79.3% 59.3%
3258488 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.77 40.0 4.75e-01 77.9% 73.0%
4142346 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.76 43.0 4.95e-01 78.6% 74.5%
3391380 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 45.0 5.30e-01 95.9% 82.9%
3405912 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.75 49.0 4.51e-01 77.2% 51.4%
3496310 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 48.0 5.25e-01 94.5% 79.2%
3585432 604.1.1.98 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1 0.74 44.0 4.95e-01 95.9% 75.7%
3817615 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 45.0 5.20e-01 93.8% 83.8%
4979111 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.72 44.0 5.18e-01 95.9% 87.0%
3801688 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 44.0 5.11e-01 93.8% 83.8%
4499455 633.5.1.1 alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA 0.72 64.0 6.18e-01 93.8% 91.9%
3638080 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.71 50.0 4.98e-01 95.9% 69.3%
3430123 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 48.0 4.44e-01 99.3% 55.0%
3901327 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.70 39.0 4.41e-01 95.9% 69.6%
3907116 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 50.0 4.98e-01 95.9% 71.3%
3972329 633.5.1.0 alpha bundles › Bromodomain-like › LemA-like › LemA-like 0.69 57.0 5.48e-01 86.9% 86.7%
4969435 633.5.1.1 alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA 0.69 62.0 5.87e-01 95.9% 88.2%
3577230 604.1.1.5 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3 0.69 44.0 5.02e-01 94.5% 87.6%
3603512 633.5.1.1 alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA 0.68 59.0 6.00e-01 91.7% 99.3%
3690382 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 51.0 5.11e-01 95.9% 77.2%
3852832 3922.1.1.72 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › FAM186A-B_C 0.67 51.0 5.06e-01 99.3% 75.3%
3970500 633.5.1.1 alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA 0.67 58.0 5.61e-01 91.7% 96.9%
3539335 3874.1.1.4 extended segments › Agnoprotein › Agnoprotein › Agnoprotein › UPF0220 0.67 45.0 4.59e-01 96.6% 70.0%
4019922 611.4.1.0 alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like 0.66 45.0 4.18e-01 100.0% 57.1%
3729457 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.64 49.0 3.50e-01 79.3% 41.7%
3718013 621.1.1.7 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 0.63 33.0 3.97e-01 91.0% 74.7%
4014998 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 48.0 4.66e-01 95.9% 72.7%
3932767 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.61 48.0 4.07e-01 91.7% 50.2%
4420057 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 42.0 4.35e-01 80.7% 75.6%
3502968 3684.1.1.23 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › CA109-like 0.60 55.0 4.91e-01 95.9% 75.4%
3994773 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.60 46.0 4.38e-01 91.7% 68.8%
4676422 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 44.0 4.09e-01 80.7% 64.0%
3283355 150.5.1.51 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2 0.58 32.0 4.06e-01 76.6% 91.8%
4311405 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 42.0 4.07e-01 82.8% 68.1%
None 0.57 51.0 4.21e-01 95.9% 65.5%
3315617 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.57 47.0 4.08e-01 95.9% 57.3%
4286404 3755.1.1.14 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › T3SSipB 0.57 51.0 4.73e-01 95.9% 82.8%
3596922 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 47.0 4.57e-01 88.3% 91.8%
4017645 603.1.1.6 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.56 50.0 4.57e-01 95.9% 78.4%
3351521 603.1.1.98 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.55 49.0 4.46e-01 95.9% 73.2%
3911736 109.4.1.513 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CCDC142 0.55 49.0 3.32e-01 99.3% 27.3%
3639947 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.55 51.0 4.66e-01 99.3% 96.8%
3742868 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.54 43.0 3.43e-01 81.4% 44.5%
3722245 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.54 46.0 3.66e-01 90.3% 52.1%
3239305 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.53 47.0 3.72e-01 96.6% 69.2%
3940940 3755.3.1.288 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LMBR1 0.53 42.0 4.56e-01 98.6% 96.8%
3268437 622.4.1.60 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › zf-RING_2 0.53 47.0 4.03e-01 96.6% 63.0%
3784493 603.1.1.17 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.53 49.0 4.03e-01 99.3% 70.8%
4966426 109.3.1.325 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › ATP-synt_C 0.53 38.0 3.64e-01 73.8% 94.7%
3597554 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.53 45.0 3.60e-01 91.7% 76.5%
3279024 150.5.1.51 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2 0.52 40.0 4.21e-01 78.6% 91.5%
3692081 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.52 45.0 4.54e-01 93.1% 92.0%
3925684 5001.1.1.60 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.52 43.0 3.44e-01 90.3% 76.0%
3483091 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.51 39.0 3.28e-01 79.3% 51.7%
3498232 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 48.0 4.33e-01 99.3% 88.9%
4986986 3633.1.1.0 alpha duplicates or obligate multimers › Haptoglobin-hemoglobin receptor › Haptoglobin-hemoglobin receptor › Haptoglobin-hemoglobin receptor 0.51 39.0 3.43e-01 79.3% 90.7%
4979114 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.50 35.0 3.77e-01 90.3% 82.4%