←Back to structures

S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00350

Bact-Vir

S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00350

Identity

Kingdom:
phage

Quality

82.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-101
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zfiA00 1.10.890.40 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.75 67.0 6.43e-01 100.0% 86.0%
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.72 57.0 5.87e-01 100.0% 88.6%
1wy9A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 48.0 4.38e-01 86.7% 84.7%
3smvA02 1.10.150.750 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 41.0 4.26e-01 84.3% 77.9%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.59 44.0 4.33e-01 100.0% 75.3%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 43.0 4.34e-01 89.2% 83.5%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.55 45.0 3.98e-01 91.6% 93.7%
1f1mA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.54 47.0 3.85e-01 100.0% 63.0%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 46.0 3.67e-01 100.0% 83.1%
7uuim02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.53 36.0 3.66e-01 71.1% 98.8%
1v1gA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 38.0 3.02e-01 80.7% 88.8%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.51 38.0 3.27e-01 78.3% 78.4%
3m4uB00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 44.0 3.09e-01 97.6% 89.8%
1c17M00 1.20.120.220 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ATP synthase, F0 complex, subunit A 0.51 44.0 3.78e-01 100.0% 69.0%
2xubA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 32.0 3.11e-01 83.1% 56.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4678853 185.1.2.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Protein HNS-dependent expression A HdeA › HdeA 0.73 58.0 6.12e-01 100.0% 94.6%
3652060 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 37.0 3.94e-01 78.3% 65.3%
4996540 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.63 45.0 4.55e-01 100.0% 75.3%
3596625 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 40.0 4.30e-01 92.8% 78.6%
3170194 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 39.0 3.96e-01 98.8% 64.7%
3913563 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 36.0 3.63e-01 79.5% 57.6%
4390541 4067.1.1.1 ↗ alpha bundles › FdhE-like › FdhE-like › FdhE-like › FdhE 0.59 50.0 4.04e-01 94.0% 80.0%
3630738 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.58 41.0 4.01e-01 88.0% 67.8%
3347068 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.58 44.0 3.34e-01 83.1% 41.0%
3743396 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 36.0 3.56e-01 98.8% 58.9%
4045986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 39.0 4.12e-01 92.8% 81.3%
61904 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.55 42.0 4.24e-01 89.2% 82.6%
4084490 160.1.1.4 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C 0.55 42.0 4.00e-01 84.3% 91.3%
5023341 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.54 39.0 4.20e-01 94.0% 92.9%
5060561 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 38.0 3.96e-01 86.7% 82.7%
3589212 633.2.1.1 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.52 39.0 4.07e-01 79.5% 97.3%
3478409 592.1.1.5 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26084 0.52 38.0 3.67e-01 98.8% 67.4%
3670511 108.1.1.113 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6 0.51 40.0 3.21e-01 88.0% 73.9%