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S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00550

Bact-Vir

S2_006_000_R2_scaffold_7_prodigal-single.1__X__X__00550

Identity

Kingdom:
phage

Quality

75.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-89
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.30e-01 83.3% 81.7%
6asoH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 3.46e-01 83.3% 68.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.84e-01 88.1% 96.6%
4lx3A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 40.0 3.10e-01 81.0% 40.6%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 36.0 3.33e-01 73.8% 57.9%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 39.0 2.86e-01 90.5% 79.6%
3b70A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 37.0 2.60e-01 78.6% 37.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3282690 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.60 42.0 3.16e-01 78.6% 36.7%
3389763 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.56 42.0 3.45e-01 90.5% 57.9%
4019455 2003.1.2.63 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N, GMC_oxred_C, NAD_binding_8 0.55 39.0 2.19e-01 85.7% 5.3%