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S2_009_000_R2_scaffold_143_prodigal-single.1__X__X__00197
Bact-VirS2_009_000_R2_scaffold_143_prodigal-single.1__X__X__00197
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-58_169-280
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02086.22 best | MethyltransfD12 | 26.7 | 6.00e-06 | 64.3% | 32.2% |
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q0sA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.89 | 75.0 | 7.77e-01 | 100.0% | 92.5% |
| 2g1pB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.86 | 71.0 | 7.37e-01 | 100.0% | 90.4% |
| 2dpmA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.84 | 73.0 | 7.36e-01 | 100.0% | 90.3% |
| 2b9eA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 63.0 | 5.83e-01 | 100.0% | 98.5% |
| 4pwyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 63.0 | 5.35e-01 | 100.0% | 75.6% |
| 1ej0A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 63.0 | 5.99e-01 | 100.0% | 95.0% |
| 2igtA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 62.0 | 5.32e-01 | 100.0% | 78.6% |
| 3tkaA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 63.0 | 5.93e-01 | 100.0% | 97.8% |
| 6jp6D01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 62.0 | 5.45e-01 | 100.0% | 80.8% |
| 1d2gA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 62.0 | 5.81e-01 | 100.0% | 97.3% |
| 1rjgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 61.0 | 4.97e-01 | 100.0% | 73.2% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 61.0 | 5.81e-01 | 98.7% | 94.6% |
| 1ne2B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 62.0 | 5.90e-01 | 100.0% | 88.5% |
| 1bxkA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 55.0 | 4.64e-01 | 88.5% | 93.7% |
| 3kkiA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.65 | 58.0 | 5.04e-01 | 94.9% | 78.0% |
| 3milB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 55.0 | 4.79e-01 | 91.1% | 87.8% |
| 1qyrA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 61.0 | 5.74e-01 | 100.0% | 95.1% |
| 2z0mA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 53.0 | 4.99e-01 | 87.3% | 79.1% |
| 4lg1B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 60.0 | 5.36e-01 | 100.0% | 81.2% |
| 2i4rB00 | 3.40.50.10580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F | 0.64 | 34.0 | 4.48e-01 | 88.5% | 98.8% |
| 8gj8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 58.0 | 4.94e-01 | 99.4% | 76.4% |
| 2c7rA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 58.0 | 5.22e-01 | 100.0% | 80.6% |
| 2m71A00 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.63 | 35.0 | 4.35e-01 | 91.7% | 87.8% |
| 4h0nA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 54.0 | 4.97e-01 | 91.7% | 83.8% |
| 7u7hA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.62 | 55.0 | 4.89e-01 | 99.4% | 67.3% |
| 6fdfA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 53.0 | 4.92e-01 | 91.7% | 85.1% |
| 3lufB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 45.0 | 4.97e-01 | 91.1% | 96.8% |
| 1eg2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 47.0 | 3.91e-01 | 89.2% | 47.4% |
| 3euaF01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.60 | 49.0 | 4.99e-01 | 96.8% | 87.2% |
| 3o9zA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 45.0 | 4.93e-01 | 79.0% | 100.0% |
| 4k2bA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.60 | 52.0 | 4.20e-01 | 94.3% | 60.1% |
| 2fnuA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.60 | 52.0 | 4.53e-01 | 95.5% | 76.7% |
| 1wdeA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.60 | 39.0 | 4.43e-01 | 96.8% | 88.7% |
| 6lpmA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.60 | 54.0 | 4.67e-01 | 100.0% | 84.7% |
| 2afbB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.60 | 51.0 | 4.01e-01 | 91.7% | 70.6% |
| 7br2D01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.59 | 52.0 | 4.70e-01 | 96.2% | 98.6% |
| 1zzgA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.59 | 51.0 | 5.04e-01 | 98.1% | 88.2% |
| 2o4cA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 53.0 | 5.22e-01 | 97.5% | 99.4% |
| 8bkdA01 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.58 | 46.0 | 4.11e-01 | 83.4% | 95.9% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.58 | 32.0 | 4.13e-01 | 81.5% | 97.7% |
| 3nhmA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 41.0 | 4.66e-01 | 89.2% | 99.1% |
| 3lncA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 37.0 | 4.06e-01 | 91.7% | 78.9% |
| 1qxnA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.57 | 35.0 | 3.76e-01 | 82.2% | 69.3% |
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 43.0 | 4.59e-01 | 90.4% | 92.5% |
| 7ntgA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.56 | 49.0 | 4.73e-01 | 98.1% | 83.6% |
| 2qyaA01 | 3.30.1860.10 | Alpha Beta › 2-Layer Sandwich › uncharacterized conserved protein from methanopyrus kandleri fold like › uncharacterized conserved protein from methanopyrus kandleri domain like | 0.55 | 35.0 | 4.19e-01 | 86.6% | 93.5% |
| 5fc1A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.55 | 48.0 | 3.59e-01 | 96.8% | 95.1% |
| 5karA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.54 | 47.0 | 3.56e-01 | 96.2% | 96.3% |
| 6zb8A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 47.0 | 3.70e-01 | 97.5% | 96.7% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 47.0 | 3.77e-01 | 95.5% | 88.5% |
| 4fhdA02 | 3.80.30.30 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › | 0.53 | 45.0 | 4.00e-01 | 91.1% | 91.2% |
| 4c4aA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 4.46e-01 | 100.0% | 91.7% |
| 5eyfA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 33.0 | 3.97e-01 | 70.1% | 98.0% |
| 1nxuA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.53 | 33.0 | 3.40e-01 | 86.0% | 63.8% |
| 6fpoS01 | 3.40.50.700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NADH:ubiquinone oxidoreductase-like, 20kDa subunit | 0.53 | 44.0 | 4.26e-01 | 89.8% | 97.8% |
| 3vdhA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.63e-01 | 96.8% | 76.3% |
| 2ei9A00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.52 | 47.0 | 4.28e-01 | 100.0% | 85.0% |
| 3tebB00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.52 | 47.0 | 3.98e-01 | 100.0% | 86.7% |
| 5xyjA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 34.0 | 3.41e-01 | 100.0% | 64.3% |
| 5ab4A00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 40.0 | 2.98e-01 | 80.3% | 88.0% |
| 1u0mA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 38.0 | 3.49e-01 | 100.0% | 59.9% |
| 1tedB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 37.0 | 3.42e-01 | 100.0% | 57.1% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4241513 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.86 | 83.0 | 6.48e-01 | 100.0% | 90.8% |
| 4200568 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.85 | 82.0 | 6.58e-01 | 100.0% | 94.2% |
| 4585065 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.85 | 82.0 | 5.22e-01 | 99.4% | 42.7% |
| 9374 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.85 | 82.0 | 6.70e-01 | 100.0% | 95.8% |
| 4949366 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.79 | 76.0 | 5.91e-01 | 100.0% | 95.7% |
| 4392983 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.78 | 75.0 | 5.91e-01 | 100.0% | 91.6% |
| 4006858 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.76 | 73.0 | 5.91e-01 | 100.0% | 93.0% |
| 4950762 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.76 | 73.0 | 5.90e-01 | 100.0% | 94.1% |
| 5080315 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.75 | 61.0 | 6.18e-01 | 100.0% | 85.7% |
| 4996844 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.73 | 61.0 | 6.07e-01 | 100.0% | 84.2% |
| 3349539 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.70 | 64.0 | 4.82e-01 | 100.0% | 75.9% |
| 3236079 | 2003.1.5.112 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF268 | 0.69 | 64.0 | 4.88e-01 | 100.0% | 55.1% |
| 4522346 | 2003.1.5.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 | 0.69 | 64.0 | 5.70e-01 | 100.0% | 87.7% |
| 4515089 | 2003.1.5.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 | 0.69 | 64.0 | 5.53e-01 | 100.0% | 87.2% |
| 4358227 | 2003.1.5.138 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020+Methyltrans_SAM | 0.68 | 64.0 | 4.26e-01 | 100.0% | 36.7% |
| 4464495 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.68 | 59.0 | 4.44e-01 | 91.7% | 47.2% |
| 9408 | 2003.1.5.74 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM | 0.67 | 62.0 | 4.96e-01 | 100.0% | 63.7% |
| 5048571 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.67 | 62.0 | 5.61e-01 | 100.0% | 87.1% |
| 4337398 | 2003.1.5.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 | 0.67 | 62.0 | 5.91e-01 | 100.0% | 96.2% |
| 4588619 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.67 | 56.0 | 4.06e-01 | 89.2% | 39.2% |
| 4639416 | 2003.1.5.74 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM | 0.66 | 62.0 | 4.73e-01 | 100.0% | 52.1% |
| 4408082 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.66 | 58.0 | 4.36e-01 | 94.9% | 49.7% |
| 4027524 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.66 | 51.0 | 5.02e-01 | 100.0% | 74.7% |
| 5030356 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.66 | 56.0 | 4.28e-01 | 91.1% | 47.7% |
| 3205906 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.66 | 38.0 | 4.85e-01 | 90.4% | 95.8% |
| 3272812 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.65 | 60.0 | 5.46e-01 | 100.0% | 96.7% |
| 4674020 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.65 | 57.0 | 4.18e-01 | 94.3% | 46.1% |
| 3859166 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.65 | 60.0 | 5.34e-01 | 100.0% | 77.6% |
| 4130546 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.65 | 57.0 | 4.22e-01 | 94.3% | 46.1% |
| 4410716 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 60.0 | 5.11e-01 | 98.7% | 69.3% |
| 4628792 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.65 | 56.0 | 4.05e-01 | 91.7% | 39.8% |
| 4273041 | 2003.1.1.85 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SpnB_Rossmann | 0.65 | 54.0 | 4.96e-01 | 89.2% | 88.3% |
| 4584061 | 2003.1.5.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ | 0.65 | 59.0 | 5.74e-01 | 98.7% | 97.6% |
| 5066006 | 2007.24.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › AtpF-like › AtpF-like › ATP-synt_F | 0.64 | 41.0 | 4.78e-01 | 91.1% | 90.9% |
| 4569653 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.64 | 56.0 | 4.19e-01 | 94.9% | 46.4% |
| 3788345 | 2003.1.5.176 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BMT5-like | 0.64 | 58.0 | 4.70e-01 | 97.5% | 78.5% |
| 4303907 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.64 | 54.0 | 3.99e-01 | 89.8% | 42.3% |
| 5015069 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.64 | 57.0 | 4.82e-01 | 96.8% | 72.9% |
| 3798236 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.63 | 58.0 | 5.27e-01 | 100.0% | 81.0% |
| 3617145 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.63 | 58.0 | 5.22e-01 | 100.0% | 78.6% |
| 2459818 | 2003.1.11.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh | 0.63 | 40.0 | 4.75e-01 | 89.2% | 96.2% |
| 4365581 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.62 | 47.0 | 4.80e-01 | 92.4% | 80.7% |
| 4162847 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.62 | 54.0 | 5.20e-01 | 93.0% | 92.8% |
| 5039712 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 56.0 | 5.18e-01 | 99.4% | 87.5% |
| 4416759 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.61 | 53.0 | 4.06e-01 | 91.7% | 47.9% |
| 4028202 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.61 | 45.0 | 4.84e-01 | 85.4% | 89.6% |
| 4931829 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.61 | 40.0 | 4.44e-01 | 96.8% | 84.0% |
| 3557282 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.59 | 36.0 | 4.02e-01 | 91.7% | 76.7% |
| 4937009 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.59 | 47.0 | 4.86e-01 | 96.8% | 89.7% |
| 4943477 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 51.0 | 4.63e-01 | 95.5% | 83.2% |
| 5042635 | 7597.1.1.0 ↗ | a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain | 0.58 | 33.0 | 4.08e-01 | 77.1% | 90.5% |
| 1624667 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 50.0 | 4.27e-01 | 100.0% | 90.6% |
| 4542856 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.55 | 49.0 | 3.67e-01 | 100.0% | 41.2% |
| 5010754 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.54 | 46.0 | 4.32e-01 | 91.1% | 100.0% |
| 3576019 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.54 | 49.0 | 3.68e-01 | 100.0% | 81.2% |
| 3786326 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.54 | 49.0 | 4.05e-01 | 100.0% | 80.2% |
| 3605229 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.54 | 48.0 | 3.26e-01 | 98.1% | 30.2% |
| 4344284 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.54 | 49.0 | 3.71e-01 | 100.0% | 80.8% |
| 1297491 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.54 | 48.0 | 3.76e-01 | 98.1% | 53.2% |
| 3611654 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.53 | 48.0 | 4.20e-01 | 100.0% | 89.0% |
| 5018869 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.53 | 33.0 | 3.93e-01 | 86.0% | 94.9% |
| 3747429 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 41.0 | 3.04e-01 | 82.8% | 54.8% |
| 2394500 | 328.8.1.2 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › B3R | 0.53 | 36.0 | 3.70e-01 | 100.0% | 70.3% |
| 3743398 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.53 | 48.0 | 3.29e-01 | 100.0% | 52.0% |
| 4982503 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 47.0 | 3.66e-01 | 97.5% | 65.3% |
| 3936939 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.52 | 38.0 | 3.50e-01 | 75.2% | 83.3% |
| 1138908 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.52 | 47.0 | 3.81e-01 | 98.1% | 63.2% |
| 4256806 | 2007.15.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › CAP12-PCTIR_TIR | 0.52 | 43.0 | 4.41e-01 | 89.8% | 91.9% |
| 3937883 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.52 | 46.0 | 4.07e-01 | 94.9% | 89.8% |
| 3168174 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.52 | 47.0 | 3.06e-01 | 100.0% | 39.0% |
| 3797564 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.51 | 46.0 | 3.57e-01 | 100.0% | 84.9% |
| 4020677 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.50 | 39.0 | 4.20e-01 | 86.6% | 95.6% |
| 4272781 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.50 | 44.0 | 3.69e-01 | 98.1% | 56.5% |
D2
high
residues 70-160
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q0sA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.87 | 79.0 | 7.80e-01 | 98.9% | 91.6% |
| 2g1pA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.79 | 71.0 | 6.93e-01 | 100.0% | 89.0% |
| 2dpmA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.71 | 64.0 | 6.14e-01 | 100.0% | 89.3% |
| 1vhnA02 | 1.10.1200.80 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 | 0.53 | 39.0 | 4.30e-01 | 94.5% | 100.0% |
| 3u52D00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.53 | 38.0 | 2.62e-01 | 75.8% | 63.4% |
| 5swuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 45.0 | 3.38e-01 | 100.0% | 84.1% |
| 3v2lA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 39.0 | 3.59e-01 | 80.2% | 100.0% |
| 6vynC01 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.52 | 39.0 | 4.19e-01 | 94.5% | 100.0% |
| 1sxjE02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 33.0 | 3.87e-01 | 85.7% | 92.2% |
| 4kwaB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 44.0 | 3.54e-01 | 98.9% | 61.5% |
| 3d0cB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 44.0 | 3.12e-01 | 100.0% | 59.7% |
| 3kcuD00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.50 | 41.0 | 3.16e-01 | 95.6% | 96.4% |
| 2lpnA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.50 | 41.0 | 3.99e-01 | 93.4% | 87.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4241513 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.90 | 86.0 | 5.74e-01 | 100.0% | 30.8% |
| 9374 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.89 | 81.0 | 5.65e-01 | 100.0% | 34.0% |
| 4585065 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.88 | 84.0 | 4.90e-01 | 100.0% | 14.7% |
| 4200568 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.88 | 83.0 | 5.69e-01 | 100.0% | 33.5% |
| 4392983 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.80 | 73.0 | 5.05e-01 | 100.0% | 33.3% |
| 4006858 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.79 | 71.0 | 4.98e-01 | 100.0% | 32.6% |
| 4949366 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.77 | 70.0 | 4.80e-01 | 100.0% | 35.0% |
| 4988477 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.76 | 67.0 | 4.69e-01 | 100.0% | 31.4% |
| 4482107 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.75 | 68.0 | 4.73e-01 | 100.0% | 33.0% |
| 4950762 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.70 | 63.0 | 4.49e-01 | 100.0% | 34.1% |
| 3178763 | 109.58.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C | 0.52 | 36.0 | 3.39e-01 | 73.6% | 65.2% |
| 3956364 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.51 | 44.0 | 3.93e-01 | 98.9% | 81.5% |
| 4033699 | 621.1.1.10 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › DUF4118 | 0.51 | 35.0 | 3.20e-01 | 70.3% | 76.0% |