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S2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00130
Bact-VirS2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00130
Identity
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-93
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sfnA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 40.0 | 2.56e-01 | 88.9% | 14.3% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 40.0 | 2.57e-01 | 75.9% | 92.7% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 45.0 | 4.54e-01 | 96.3% | 87.3% |
| 3hx1B00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 46.0 | 3.74e-01 | 90.7% | 99.1% |
| 2cjsA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 46.0 | 3.37e-01 | 92.6% | 85.6% |
| 5wfiA01 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 45.0 | 3.47e-01 | 88.9% | 43.8% |
| 2w5eA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 38.0 | 3.64e-01 | 85.2% | 60.0% |
| 1wv3A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 43.0 | 3.86e-01 | 85.2% | 100.0% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.62e-01 | 94.4% | 57.7% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.54 | 35.0 | 3.71e-01 | 100.0% | 97.3% |
| 6grqA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.63e-01 | 94.4% | 53.5% |
| 3gmgA00 | 3.30.70.1880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 | 0.53 | 43.0 | 3.30e-01 | 96.3% | 75.5% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 44.0 | 2.99e-01 | 100.0% | 29.0% |
| 1r6vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.03e-01 | 92.6% | 38.4% |
| 4odbA00 | 2.60.90.20 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain | 0.52 | 42.0 | 3.04e-01 | 92.6% | 32.1% |
| 2eayB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.77e-01 | 88.9% | 87.8% |
| 2g9gA00 | 2.60.120.1020 | Mainly Beta › Sandwich › Jelly Rolls › PAW domain | 0.51 | 41.0 | 2.95e-01 | 96.3% | 75.1% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.51 | 37.0 | 3.72e-01 | 88.9% | 78.0% |
| 4epsA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.51 | 43.0 | 3.33e-01 | 100.0% | 42.2% |
| 3hrzC01 | 2.20.210.20 | Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › | 0.50 | 36.0 | 3.74e-01 | 88.9% | 87.8% |
| 3pu9A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.50 | 41.0 | 2.82e-01 | 100.0% | 25.5% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.50 | 40.0 | 2.87e-01 | 90.7% | 38.7% |
| 1wfjA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 43.0 | 3.38e-01 | 100.0% | 43.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4156994 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.59 | 48.0 | 4.21e-01 | 90.7% | 91.3% |
| 3560523 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.58 | 48.0 | 3.93e-01 | 94.4% | 56.2% |
| 3385821 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.56 | 42.0 | 3.77e-01 | 90.7% | 56.2% |
| 3615013 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 45.0 | 3.62e-01 | 92.6% | 54.8% |
| 3398109 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 45.0 | 3.75e-01 | 92.6% | 51.0% |
| 1405101 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.55 | 41.0 | 4.21e-01 | 96.3% | 88.0% |
| 3488518 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 45.0 | 3.73e-01 | 94.4% | 55.0% |
| 3787756 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.54 | 45.0 | 3.35e-01 | 98.1% | 81.6% |
| 4966519 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 41.0 | 4.00e-01 | 85.2% | 91.7% |
| 3937201 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 44.0 | 3.68e-01 | 94.4% | 53.7% |
| 4951062 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 40.0 | 3.96e-01 | 85.2% | 91.7% |
| 3956567 | 304.148.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Rv1825/MT1873 › Uncharacterized protein Rv1825/MT1873 › DUF881 | 0.53 | 43.0 | 3.24e-01 | 96.3% | 72.0% |
| 3261170 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 3.54e-01 | 94.4% | 52.4% |
| 3605671 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 44.0 | 3.42e-01 | 100.0% | 41.5% |
| 3514672 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.53 | 44.0 | 3.24e-01 | 98.1% | 82.5% |
| 3254690 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.58e-01 | 94.4% | 53.0% |
| 3596672 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 43.0 | 3.21e-01 | 94.4% | 40.0% |
| 3670515 | 11.1.1.855 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 | 0.52 | 39.0 | 3.76e-01 | 83.3% | 75.4% |
| 4514555 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.52 | 43.0 | 3.04e-01 | 98.1% | 72.3% |
| 4245466 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.52 | 39.0 | 4.09e-01 | 85.2% | 88.0% |
| 4957573 | 11.41.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Baseplate wedge protein gp6 Ig-like domain › Baseplate wedge protein gp6 Ig-like domain | 0.52 | 39.0 | 3.59e-01 | 88.9% | 61.3% |
| 3623013 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.52 | 42.0 | 3.56e-01 | 94.4% | 53.7% |
| 4147366 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.52 | 41.0 | 4.32e-01 | 87.0% | 97.9% |
| 5055297 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 41.0 | 3.63e-01 | 92.6% | 60.0% |
| 3264187 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.38e-01 | 87.0% | 50.5% |
| 3936644 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 41.0 | 3.15e-01 | 94.4% | 39.3% |
| 3598014 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 2.97e-01 | 92.6% | 46.9% |
| 4987602 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.51 | 37.0 | 3.00e-01 | 83.3% | 60.0% |
| 3174840 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 41.0 | 3.27e-01 | 94.4% | 50.0% |
| 3797486 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 36.0 | 3.50e-01 | 85.2% | 66.2% |
| 3270193 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.25e-01 | 87.0% | 51.0% |
| 3236073 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.51 | 42.0 | 3.87e-01 | 100.0% | 82.7% |
| 3212772 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.50 | 41.0 | 3.81e-01 | 98.1% | 82.4% |
| 4947644 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 37.0 | 3.66e-01 | 90.7% | 75.0% |
| 3611004 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.50 | 40.0 | 3.13e-01 | 94.4% | 43.0% |
| 3916068 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.50 | 40.0 | 3.06e-01 | 94.4% | 35.2% |