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S2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00171

Bact-Vir

S2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00171

Identity

Kingdom:
phage

Quality

67.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-117
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 53.0 4.55e-01 73.6% 87.3%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.74 48.0 5.70e-01 73.6% 100.0%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.69 47.0 5.35e-01 77.3% 94.0%
1dusA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 48.0 3.96e-01 72.7% 70.6%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 48.0 4.24e-01 73.6% 86.9%
3mczA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 48.0 3.68e-01 74.5% 41.1%
3zigA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.66 44.0 4.94e-01 73.6% 90.2%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 46.0 3.54e-01 74.5% 40.6%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 46.0 3.58e-01 76.4% 36.7%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.62 39.0 4.77e-01 70.0% 100.0%
2pjdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 50.0 4.45e-01 87.3% 85.9%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 43.0 3.49e-01 72.7% 73.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 45.0 3.93e-01 77.3% 96.4%
3dmgA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 45.0 3.86e-01 78.2% 72.9%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 49.0 4.08e-01 91.8% 75.7%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.23e-01 79.1% 73.2%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 38.0 4.27e-01 77.3% 84.7%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 39.0 4.52e-01 77.3% 100.0%
3ihjA03 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 40.0 3.15e-01 71.8% 39.8%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.58 39.0 3.96e-01 86.4% 70.8%
4iscA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 40.0 3.63e-01 72.7% 85.3%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.42e-01 83.6% 86.1%
3szeA02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.57 45.0 2.83e-01 86.4% 17.5%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 46.0 4.60e-01 90.0% 86.8%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 4.02e-01 78.2% 78.6%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 46.0 4.67e-01 90.9% 88.3%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 37.0 3.27e-01 77.3% 44.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.67e-01 74.5% 59.6%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 4.12e-01 76.4% 82.0%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.98e-01 80.0% 79.4%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.63e-01 78.2% 73.3%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.32e-01 82.7% 92.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.61e-01 70.9% 64.2%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 48.0 4.02e-01 100.0% 94.8%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 43.0 4.49e-01 90.9% 97.1%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 40.0 3.83e-01 81.8% 99.2%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 35.0 4.03e-01 85.5% 100.0%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.53 36.0 4.10e-01 90.0% 100.0%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 39.0 4.16e-01 100.0% 93.6%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.74e-01 80.9% 72.1%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.86e-01 79.1% 80.0%
1kzfA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.79e-01 99.1% 69.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 4.09e-01 77.3% 100.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.51 43.0 4.38e-01 90.0% 89.2%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 39.0 3.58e-01 80.9% 100.0%
5t5sA01 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.51 38.0 3.66e-01 87.3% 67.4%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.63e-01 81.8% 71.5%
3vywA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.38e-01 93.6% 83.4%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 36.0 3.78e-01 87.3% 82.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3386910 328.5.1.1 ↗ a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.79 50.0 6.12e-01 73.6% 100.0%
5009701 328.5.1.0 ↗ a+b two layers › IF3-like › SirA-like › SirA-like 0.76 48.0 5.79e-01 71.8% 98.6%
4975750 328.5.1.1 ↗ a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.74 47.0 5.42e-01 73.6% 88.7%
3992039 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 53.0 5.72e-01 79.1% 89.4%
4974442 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.70 46.0 5.35e-01 76.4% 97.3%
4675260 328.3.1.2 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 0.69 52.0 5.12e-01 78.2% 83.5%
3758608 320.4.1.7 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 0.68 53.0 5.19e-01 82.7% 82.5%
3543869 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.68 45.0 4.82e-01 71.8% 77.9%
5062574 328.12.1.0 ↗ a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase 0.66 46.0 4.93e-01 71.8% 86.3%
3921187 320.4.1.7 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 0.66 51.0 4.11e-01 82.7% 44.5%
5027689 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 43.0 4.91e-01 85.5% 92.5%
3603302 2003.1.5.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.65 47.0 3.79e-01 75.5% 79.0%
4344883 320.4.1.1 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › TIMELESS_C 0.65 47.0 4.76e-01 77.3% 86.4%
4938239 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.64 53.0 4.43e-01 89.1% 75.3%
3343069 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.64 52.0 5.16e-01 87.3% 83.5%
4937614 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 42.0 3.79e-01 77.3% 50.3%
3403298 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.37e-01 81.8% 65.5%
5003912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.46e-01 88.2% 83.7%
5036673 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.62 53.0 4.19e-01 92.7% 95.9%
4979525 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 53.0 4.36e-01 96.4% 89.2%
4143892 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.60 51.0 4.08e-01 94.5% 96.0%
4967092 2003.1.5.80 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_24 0.59 42.0 3.41e-01 74.5% 70.9%
4972476 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 41.0 4.62e-01 71.8% 92.9%
144952 304.5.1.10 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CBD_PlyG 0.59 38.0 4.27e-01 77.3% 84.7%
4122798 242.1.1.6 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA 0.59 43.0 4.43e-01 87.3% 81.0%
3667726 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.58 45.0 4.75e-01 96.4% 93.0%
3899866 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 42.0 4.47e-01 75.5% 100.0%
4674912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.45e-01 75.5% 100.0%
5058967 304.8.1.4 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.57 38.0 4.42e-01 75.5% 98.7%
3983904 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 42.0 4.31e-01 81.8% 81.9%
3900717 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.57 38.0 4.36e-01 79.1% 96.2%
4962984 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.56 39.0 4.43e-01 89.1% 100.0%
3602137 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 44.0 4.72e-01 86.4% 94.7%
4477560 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.56 48.0 3.88e-01 93.6% 95.7%
3639719 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.56 38.0 4.31e-01 83.6% 96.2%
3227729 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.56 42.0 4.28e-01 79.1% 89.5%
4003644 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 38.0 3.28e-01 70.0% 76.6%
3170512 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.55 46.0 4.61e-01 92.7% 90.0%
4979632 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 45.0 3.83e-01 89.1% 56.7%
3727540 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.54 40.0 3.60e-01 78.2% 98.1%
3971738 304.8.1.102 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_3, ACT_7 0.54 40.0 3.84e-01 78.2% 100.0%
5027824 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.53 37.0 4.11e-01 80.9% 92.9%
3786023 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.53 40.0 3.13e-01 79.1% 37.1%
4979624 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 39.0 3.96e-01 87.3% 80.9%
3511125 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.52 36.0 2.77e-01 70.9% 42.0%
4096150 242.1.1.6 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA 0.52 44.0 4.27e-01 94.5% 84.8%
3784937 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.52 37.0 3.43e-01 76.4% 100.0%
4115819 304.48.1.48 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.52 36.0 3.15e-01 70.9% 76.5%
3414623 101.1.2.566 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.52 39.0 2.92e-01 80.9% 33.9%
3210600 327.11.2.41 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF26657 0.52 30.0 3.59e-01 90.0% 90.0%
4134167 2006.1.1.37 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.51 45.0 3.41e-01 100.0% 98.9%
4969099 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.51 46.0 3.40e-01 100.0% 96.9%
5076521 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.51 35.0 3.38e-01 74.5% 60.0%
4017316 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.50 37.0 3.21e-01 77.3% 97.1%
3698115 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.50 37.0 3.31e-01 80.0% 100.0%
3966795 304.4.1.21 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › FtsX_ECD 0.50 34.0 3.55e-01 70.9% 96.2%