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S2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00246
Bact-VirS2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00246
Identity
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.71 | 56.0 | 4.56e-01 | 100.0% | 46.6% |
| 2r6iA01 | 3.30.2180.10 | Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like | 0.66 | 58.0 | 4.87e-01 | 100.0% | 75.0% |
| 1dynA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 56.0 | 4.49e-01 | 100.0% | 53.1% |
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 56.0 | 4.25e-01 | 100.0% | 44.1% |
| 1c9rA04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 47.0 | 3.89e-01 | 92.9% | 55.1% |
| 5f67B00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.57 | 48.0 | 4.15e-01 | 100.0% | 73.2% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.56 | 37.0 | 3.81e-01 | 85.7% | 72.2% |
| 3imoC00 | 3.30.920.70 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › | 0.56 | 41.0 | 3.44e-01 | 94.6% | 43.0% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 41.0 | 3.77e-01 | 85.7% | 60.0% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 3.69e-01 | 100.0% | 50.5% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.54 | 44.0 | 3.67e-01 | 100.0% | 53.1% |
| 2jilA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 44.0 | 3.88e-01 | 100.0% | 78.9% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.53 | 39.0 | 2.67e-01 | 80.4% | 93.8% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.53 | 43.0 | 4.11e-01 | 100.0% | 83.1% |
| 5k19A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 2.80e-01 | 98.2% | 15.2% |
| 3fprA00 | 2.30.130.100 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › | 0.52 | 36.0 | 3.20e-01 | 73.2% | 52.9% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 42.0 | 2.68e-01 | 98.2% | 21.0% |
| 4ffgA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 41.0 | 2.65e-01 | 100.0% | 21.2% |
| 2r2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 34.0 | 2.49e-01 | 78.6% | 21.6% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060529 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.76 | 53.0 | 4.98e-01 | 75.0% | 88.6% |
| 5075465 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.73 | 59.0 | 5.80e-01 | 94.6% | 81.7% |
| 4188237 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.72 | 56.0 | 5.67e-01 | 92.9% | 87.3% |
| 7726 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.71 | 56.0 | 5.57e-01 | 92.9% | 82.8% |
| 3284714 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.71 | 56.0 | 5.44e-01 | 92.9% | 77.8% |
| 4297945 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.70 | 54.0 | 5.52e-01 | 92.9% | 87.3% |
| 3967666 | 2484.1.1.251 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26691 | 0.66 | 55.0 | 3.69e-01 | 98.2% | 25.3% |
| 3945393 | 7089.1.1.2 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 | 0.65 | 54.0 | 4.81e-01 | 91.1% | 66.3% |
| 4543309 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.65 | 51.0 | 4.09e-01 | 100.0% | 42.6% |
| 3555522 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.64 | 56.0 | 4.15e-01 | 100.0% | 40.0% |
| 3177726 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 52.0 | 3.65e-01 | 100.0% | 33.0% |
| 3916384 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.60 | 49.0 | 3.75e-01 | 100.0% | 39.2% |
| 2392425 | 7521.1.1.1 ↗ | a/b three-layered sandwiches › B12-dependent dehydratase associated subunit › B12-dependent dehydratase associated subunit › B12-dependent dehydratase associated subunit › Dehydratase_MU | 0.59 | 49.0 | 3.46e-01 | 94.6% | 29.7% |
| 3897865 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.58 | 48.0 | 4.09e-01 | 100.0% | 72.0% |
| 3497129 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 45.0 | 3.65e-01 | 87.5% | 48.6% |
| 3893915 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.56 | 45.0 | 3.49e-01 | 89.3% | 40.8% |
| 3344044 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 45.0 | 3.85e-01 | 89.3% | 62.2% |
| 4073485 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.55 | 46.0 | 3.90e-01 | 100.0% | 55.2% |
| 3426675 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.55 | 41.0 | 4.11e-01 | 89.3% | 78.0% |
| 3731785 | 206.1.1.82 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580 | 0.54 | 43.0 | 2.83e-01 | 94.6% | 60.3% |
| 4018331 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.54 | 44.0 | 3.23e-01 | 94.6% | 32.5% |
| 3278616 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 44.0 | 3.53e-01 | 100.0% | 68.0% |
| 3712063 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.52 | 36.0 | 2.77e-01 | 73.2% | 47.4% |
| 5003581 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.52 | 43.0 | 2.58e-01 | 92.9% | 13.1% |
| 3606615 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.51 | 35.0 | 3.09e-01 | 91.1% | 45.6% |
| 4359864 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.51 | 42.0 | 3.35e-01 | 98.2% | 58.4% |
| 4450869 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.50 | 39.0 | 2.39e-01 | 85.7% | 17.4% |
| 3771372 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.50 | 38.0 | 2.69e-01 | 94.6% | 24.6% |