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S2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00334
Bact-VirS2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00334
Identity
- Kingdom:
- phage
Quality
64.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-110
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 44.0 | 4.11e-01 | 77.0% | 64.2% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.61 | 44.0 | 3.94e-01 | 96.7% | 53.3% |
| 2rreA00 | 1.10.10.2010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 42.0 | 4.05e-01 | 82.0% | 68.9% |
| 3k53A02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 40.0 | 3.47e-01 | 75.4% | 58.2% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.55 | 42.0 | 3.46e-01 | 91.8% | 65.2% |
| 3f0zA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.54 | 38.0 | 3.15e-01 | 77.0% | 64.5% |
| 3t57A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.54 | 34.0 | 3.20e-01 | 100.0% | 50.7% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.53 | 39.0 | 2.59e-01 | 80.3% | 76.3% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 37.0 | 3.01e-01 | 77.0% | 52.0% |
| 7z0sF01 | 3.30.70.3270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 2.74e-01 | 75.4% | 72.7% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.63e-01 | 73.8% | 79.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058234 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.63 | 50.0 | 5.19e-01 | 86.9% | 96.6% |
| 3784605 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 52.0 | 3.77e-01 | 90.2% | 60.0% |
| 4162420 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.57 | 35.0 | 2.84e-01 | 77.0% | 30.4% |
| 4512991 | 4954.1.1.1 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.57 | 43.0 | 2.96e-01 | 85.2% | 42.4% |
| 3486229 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.54 | 43.0 | 3.88e-01 | 93.4% | 65.6% |
| 5057106 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.54 | 42.0 | 3.81e-01 | 91.8% | 71.1% |
| 3594048 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.51 | 39.0 | 3.64e-01 | 93.4% | 65.6% |
| 5014906 | 109.2.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Prenyltrans | 0.50 | 43.0 | 2.53e-01 | 100.0% | 46.4% |
D2
medium
residues 116-182