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S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00025

Bact-Vir

S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00025

Identity

Kingdom:
phage

Quality

40.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-111
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.82 74.0 7.18e-01 100.0% 96.5%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.75 68.0 6.25e-01 100.0% 81.4%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.74 67.0 6.03e-01 100.0% 91.3%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 62.0 5.84e-01 100.0% 89.1%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 60.0 5.61e-01 98.7% 96.8%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 47.0 4.82e-01 82.9% 74.3%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 57.0 5.77e-01 96.1% 96.0%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 59.0 5.81e-01 97.4% 100.0%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 60.0 5.22e-01 100.0% 71.2%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 59.0 5.85e-01 98.7% 98.7%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.66 55.0 4.92e-01 100.0% 65.2%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.63 53.0 5.26e-01 100.0% 92.5%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.62 53.0 3.88e-01 100.0% 38.4%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 37.0 3.70e-01 98.7% 59.0%
1dceA02 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.60 48.0 4.40e-01 90.8% 99.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 4.58e-01 93.4% 77.1%
5cwaA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.57 49.0 2.96e-01 93.4% 40.8%
6y2kA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 37.0 4.40e-01 77.6% 100.0%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.45e-01 96.1% 83.7%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 4.44e-01 98.7% 82.2%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 48.0 2.95e-01 93.4% 44.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.08e-01 100.0% 82.8%
3vgfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 35.0 3.77e-01 96.1% 77.4%
4grhA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 48.0 2.99e-01 98.7% 60.5%
1zx8A01 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.53 46.0 3.97e-01 100.0% 76.8%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.26e-01 100.0% 83.3%
5erdB05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 44.0 4.12e-01 94.7% 79.8%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.05e-01 100.0% 83.7%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 43.0 3.80e-01 100.0% 64.8%
1x5zA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.93e-01 100.0% 70.5%
3qt2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.99e-01 98.7% 72.4%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.96e-01 100.0% 79.4%
4dk0A01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.51 41.0 4.24e-01 93.4% 98.6%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 4.13e-01 90.8% 97.5%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.83e-01 93.4% 82.5%
4hljA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.89e-01 100.0% 72.3%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.50 40.0 3.15e-01 89.5% 69.5%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.93e-01 100.0% 74.2%
4rs1B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.87e-01 96.1% 74.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1030933 1.1.7.29 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › End_beta_barrel 0.82 75.0 7.10e-01 100.0% 92.1%
4028468 1.1.7.35 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.80 74.0 6.57e-01 100.0% 74.3%
5000971 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 67.0 6.30e-01 96.1% 93.3%
4946423 1.1.7.138 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.76 68.0 6.24e-01 100.0% 88.0%
4984467 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.76 68.0 6.33e-01 100.0% 91.6%
199114 1.1.7.35 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.75 68.0 5.95e-01 100.0% 70.5%
3969656 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.75 65.0 6.17e-01 96.1% 96.7%
3575535 1.1.7.113 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.73 65.0 3.97e-01 100.0% 19.1%
3389361 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 64.0 6.00e-01 100.0% 91.6%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.71 63.0 5.81e-01 100.0% 86.0%
3786521 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.71 63.0 5.52e-01 100.0% 89.6%
4510320 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.71 61.0 5.76e-01 94.7% 92.2%
3786548 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 64.0 5.93e-01 100.0% 92.6%
3602819 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 63.0 5.87e-01 100.0% 92.6%
3686772 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.70 59.0 5.20e-01 94.7% 97.4%
3355171 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 62.0 5.35e-01 100.0% 98.3%
3183224 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.70 61.0 5.62e-01 100.0% 96.0%
3742214 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 61.0 5.55e-01 100.0% 94.3%
3607489 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.69 58.0 5.48e-01 94.7% 93.7%
4012191 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 60.0 5.60e-01 98.7% 92.6%
4173804 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 59.0 5.67e-01 97.4% 93.3%
4627066 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.69 61.0 5.34e-01 100.0% 80.9%
3784709 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.69 61.0 5.22e-01 100.0% 91.2%
4940909 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 59.0 5.73e-01 96.1% 95.3%
3328574 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.69 58.0 4.96e-01 94.7% 97.6%
3268887 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 60.0 5.54e-01 100.0% 93.0%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 58.0 5.64e-01 100.0% 85.9%
3998042 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 59.0 5.34e-01 100.0% 88.6%
5053561 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 59.0 5.63e-01 100.0% 96.7%
3953578 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.66 58.0 4.91e-01 100.0% 78.5%
4083333 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 57.0 5.36e-01 100.0% 87.4%
4553723 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 56.0 5.31e-01 100.0% 86.3%
4943168 1.1.7.144 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11 0.65 57.0 5.36e-01 100.0% 95.8%
3219381 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 5.19e-01 100.0% 78.9%
3271313 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 55.0 5.32e-01 98.7% 85.9%
4429352 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 55.0 5.26e-01 100.0% 85.6%
4114062 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 5.03e-01 100.0% 90.0%
4116795 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 53.0 4.87e-01 100.0% 81.0%
4521518 1.1.7.121 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 0.62 53.0 4.69e-01 100.0% 70.4%
3525543 11.1.1.991 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28112 0.61 54.0 4.77e-01 97.4% 79.1%
3249211 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.61 51.0 4.89e-01 96.1% 78.9%
3265105 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.61 52.0 4.88e-01 96.1% 76.8%
3260571 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.61 52.0 4.84e-01 97.4% 75.8%
3251398 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.60 52.0 4.95e-01 97.4% 82.2%
3273402 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.83e-01 97.4% 84.4%
3251337 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.13e-01 97.4% 62.2%
3584840 11.1.1.936 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_nematode 0.57 47.0 3.93e-01 90.8% 97.8%
3929629 11.1.1.936 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_nematode 0.57 47.0 3.91e-01 92.1% 92.1%
3939231 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.36e-01 100.0% 71.4%
3898502 12.5.1.6 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.55 48.0 4.05e-01 100.0% 57.0%
4238718 11.1.1.457 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FixH 0.55 47.0 4.03e-01 98.7% 63.1%
3250649 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.17e-01 94.7% 71.4%
5038791 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.54 46.0 3.84e-01 100.0% 79.3%
3230798 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.36e-01 100.0% 80.0%
4946479 75.1.1.0 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.54 47.0 4.08e-01 100.0% 73.3%
3852004 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 4.03e-01 100.0% 73.6%
4592291 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.71e-01 93.4% 95.4%
3860768 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 44.0 4.20e-01 100.0% 85.3%
3217257 11.1.1.955 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th 0.52 44.0 4.10e-01 100.0% 81.0%
3939010 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.89e-01 98.7% 71.6%
3256728 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.51 44.0 3.65e-01 100.0% 73.1%
3276696 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.02e-01 96.1% 86.3%
3479862 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 4.14e-01 98.7% 84.4%
3524917 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.58e-01 97.4% 57.6%
D2 high residues 145-232
PDB
D3 high residues 354-427
PDB