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S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00044

Bact-Vir

S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00044

Identity

Kingdom:
phage

Quality

66.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-202
PDB
Domain cluster: rep: OP991903.1__WBF04831.1__X__00157__D16-183
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.68 50.0 5.47e-01 96.2% 90.3%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.63 48.0 5.35e-01 98.4% 99.3%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 32.0 4.12e-01 96.2% 100.0%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.56 37.0 4.09e-01 94.0% 82.3%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.56 29.0 3.70e-01 84.2% 87.9%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 34.0 4.16e-01 92.9% 96.6%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.53 28.0 3.81e-01 88.6% 100.0%
2okxA04 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.52 22.0 2.95e-01 71.7% 71.7%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.52 26.0 3.48e-01 77.2% 91.5%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 34.0 3.68e-01 81.5% 78.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048065 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.71 40.0 5.23e-01 89.1% 100.0%
3199763 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.63 37.0 4.32e-01 96.2% 82.4%
3699767 295.1.1.7 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.62 49.0 5.14e-01 100.0% 91.5%
3247407 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.58 39.0 4.59e-01 100.0% 99.2%
3742045 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.56 36.0 4.22e-01 94.6% 91.5%
3929330 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.54 34.0 3.98e-01 91.8% 88.5%
4175964 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.54 30.0 3.90e-01 89.1% 99.0%
3743526 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 22.0 2.71e-01 89.7% 55.8%
3958695 3484.1.1.2 ↗ a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.53 30.0 3.24e-01 86.4% 61.9%
3787121 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.52 28.0 3.37e-01 78.3% 75.2%
3423601 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.51 29.0 3.45e-01 89.7% 81.7%
3741657 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.51 31.0 3.78e-01 93.5% 95.7%