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S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00059
Bact-VirS2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00059
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-97
Domain cluster:
rep: MT811961.1__QNI21044.1__X__00098__D3-98
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20287.4 best | SH3DP | 48.3 | 1.00e-12 | 100.0% | 70.5% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 46.0 | 5.45e-01 | 100.0% | 87.1% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 45.0 | 4.98e-01 | 100.0% | 73.6% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 46.0 | 4.94e-01 | 100.0% | 71.4% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 40.0 | 4.82e-01 | 96.6% | 79.7% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 45.0 | 4.98e-01 | 100.0% | 77.5% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 44.0 | 5.15e-01 | 100.0% | 87.1% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 38.0 | 4.77e-01 | 98.9% | 86.8% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 42.0 | 5.07e-01 | 100.0% | 96.4% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.70 | 45.0 | 5.19e-01 | 100.0% | 92.1% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 44.0 | 4.79e-01 | 100.0% | 81.1% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.67 | 38.0 | 4.47e-01 | 89.9% | 79.7% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.67 | 38.0 | 4.60e-01 | 91.0% | 89.3% |
| 3itwA02 | 3.30.720.110 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.66 | 30.0 | 3.73e-01 | 88.8% | 66.1% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 36.0 | 4.42e-01 | 91.0% | 87.5% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.63 | 38.0 | 4.53e-01 | 91.0% | 91.5% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 42.0 | 4.78e-01 | 98.9% | 92.5% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 35.0 | 3.96e-01 | 98.9% | 82.8% |
| 2dt4A00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.55 | 41.0 | 3.49e-01 | 100.0% | 49.0% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 35.0 | 3.90e-01 | 97.8% | 81.7% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 42.0 | 3.02e-01 | 84.3% | 83.7% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4888987 | 4.1.1.6 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C | 0.77 | 46.0 | 5.13e-01 | 100.0% | 76.8% |
| 3742938 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.77 | 45.0 | 5.20e-01 | 98.9% | 80.0% |
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 44.0 | 5.48e-01 | 100.0% | 92.7% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.77 | 46.0 | 5.26e-01 | 100.0% | 82.8% |
| 5043533 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 50.0 | 5.70e-01 | 100.0% | 92.2% |
| 5026824 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 45.0 | 5.04e-01 | 100.0% | 75.7% |
| 4241924 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.76 | 47.0 | 4.73e-01 | 100.0% | 62.2% |
| 4300449 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.75 | 45.0 | 5.20e-01 | 100.0% | 83.1% |
| 4605602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 47.0 | 5.33e-01 | 100.0% | 86.2% |
| 5022848 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 46.0 | 5.49e-01 | 100.0% | 93.3% |
| 5075469 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.74 | 45.0 | 5.11e-01 | 100.0% | 83.1% |
| 3687350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 42.0 | 5.22e-01 | 94.4% | 90.9% |
| 3927411 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.74 | 39.0 | 5.09e-01 | 78.7% | 100.0% |
| 5073368 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 46.0 | 5.11e-01 | 100.0% | 81.4% |
| 3591224 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 41.0 | 5.22e-01 | 97.8% | 100.0% |
| 3597255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 45.0 | 4.60e-01 | 100.0% | 64.7% |
| 4629735 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 45.0 | 5.14e-01 | 100.0% | 86.2% |
| 4929550 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.70 | 43.0 | 4.76e-01 | 98.9% | 78.6% |
| 5052257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 42.0 | 4.93e-01 | 100.0% | 90.0% |
| 4132516 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.68 | 44.0 | 4.66e-01 | 100.0% | 73.8% |
| 4000622 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.67 | 40.0 | 3.64e-01 | 96.6% | 45.0% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.65 | 43.0 | 4.69e-01 | 100.0% | 81.3% |
| 3586562 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 42.0 | 4.35e-01 | 100.0% | 70.6% |
| 3701345 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 47.0 | 4.97e-01 | 95.5% | 88.7% |
| 4207556 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.60 | 44.0 | 4.87e-01 | 98.9% | 100.0% |
| 5025236 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.59 | 42.0 | 3.73e-01 | 100.0% | 51.2% |
| 3679362 | 4.1.1.351 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 | 0.57 | 49.0 | 5.06e-01 | 100.0% | 97.6% |
| 5053064 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.56 | 29.0 | 3.59e-01 | 82.0% | 81.8% |
| 2502534 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.55 | 37.0 | 3.83e-01 | 88.8% | 71.3% |
| 4578663 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 35.0 | 3.95e-01 | 94.4% | 84.3% |
| 3197575 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.54 | 38.0 | 3.87e-01 | 88.8% | 73.3% |
| 3374503 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.53 | 43.0 | 3.66e-01 | 100.0% | 55.0% |
| 3349450 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.53 | 39.0 | 3.53e-01 | 97.8% | 57.5% |
| 3822639 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.53 | 38.0 | 2.58e-01 | 76.4% | 52.9% |
| 2394428 | 330.20.1.1 ↗ | a+b two layers › dsRBD-like › Anti-CRISPR protein AcrF2 › Anti-CRISPR protein AcrF2 › AcrF2 | 0.52 | 30.0 | 2.99e-01 | 84.3% | 52.2% |
| 3707910 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.51 | 39.0 | 3.98e-01 | 85.4% | 91.1% |
| 142988 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.50 | 37.0 | 3.69e-01 | 78.7% | 92.3% |