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S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00116
Bact-VirS2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00116
Identity
- Kingdom:
- phage
Quality
68.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-216
Domain cluster:
rep: MK308677.1__QAX97145.1__X__00201__D6-173
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b3wA00 | 1.10.357.40 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like | 0.80 | 66.0 | 6.56e-01 | 85.4% | 86.9% |
| 5is2A03 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 39.0 | 3.54e-01 | 82.3% | 49.1% |
| 2jgdA04 | 3.40.50.11610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain | 0.54 | 29.0 | 3.01e-01 | 84.1% | 52.2% |
| 3r7tA02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.53 | 26.0 | 3.37e-01 | 99.4% | 82.4% |
| 7wgrA03 | 3.40.50.11610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain | 0.51 | 27.0 | 3.04e-01 | 85.4% | 62.6% |
| 1crkA01 | 1.10.135.10 | Mainly Alpha › Orthogonal Bundle › Transferase Creatine Kinase; Chain A, domain 1 › ATP:guanido phosphotransferase, N-terminal domain | 0.51 | 22.0 | 2.76e-01 | 93.9% | 62.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3705063 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.83 | 67.0 | 7.09e-01 | 82.9% | 100.0% |
| 3264987 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.81 | 65.0 | 6.96e-01 | 83.5% | 100.0% |
| 3972372 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.75 | 67.0 | 6.48e-01 | 93.3% | 100.0% |
| 3995458 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.75 | 55.0 | 6.00e-01 | 74.4% | 97.8% |
| 3281506 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.75 | 65.0 | 6.82e-01 | 95.1% | 100.0% |
| 3279758 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.72 | 62.0 | 6.54e-01 | 92.1% | 100.0% |
| 3514172 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.70 | 62.0 | 6.22e-01 | 93.3% | 100.0% |
| 3616804 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.67 | 60.0 | 5.67e-01 | 94.5% | 100.0% |