←Back to structures
S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00148
Bact-VirS2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00148
Identity
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-46
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i2cA01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.72 | 62.0 | 4.43e-01 | 100.0% | 87.2% |
| 1u0tB01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.68 | 56.0 | 3.98e-01 | 100.0% | 83.5% |
| 6b4rA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.63 | 49.0 | 3.05e-01 | 90.5% | 49.4% |
| 2e9yB00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.61 | 41.0 | 2.51e-01 | 73.8% | 17.6% |
| 1o75A02 | 2.30.30.470 | Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B | 0.60 | 43.0 | 3.13e-01 | 76.2% | 33.0% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.60 | 41.0 | 3.15e-01 | 71.4% | 60.9% |
| 3g1wA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 47.0 | 3.33e-01 | 97.6% | 40.7% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.54 | 39.0 | 2.40e-01 | 85.7% | 21.4% |
| 1qr0A02 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.54 | 42.0 | 3.25e-01 | 88.1% | 87.4% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 38.0 | 2.52e-01 | 83.3% | 77.7% |
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.53 | 38.0 | 2.96e-01 | 83.3% | 69.4% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.68e-01 | 95.2% | 69.8% |
| 1wruA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.51 | 41.0 | 3.39e-01 | 100.0% | 83.0% |
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.00e-01 | 95.2% | 93.1% |
| 1bbyA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.29e-01 | 85.7% | 53.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024095 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.64 | 51.0 | 3.26e-01 | 95.2% | 32.2% |
| 4627178 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 50.0 | 2.76e-01 | 97.6% | 24.8% |
| 4274049 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.57 | 39.0 | 2.57e-01 | 71.4% | 31.4% |
| 3478227 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 3.46e-01 | 76.2% | 88.6% |
| 4679974 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.55 | 41.0 | 3.56e-01 | 88.1% | 58.7% |
| 3687407 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.55 | 42.0 | 3.64e-01 | 88.1% | 65.7% |
| 5067176 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.54 | 42.0 | 2.74e-01 | 88.1% | 28.6% |
| 3831895 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.54 | 38.0 | 2.32e-01 | 76.2% | 12.7% |
| 5042330 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.54 | 46.0 | 3.97e-01 | 100.0% | 70.0% |
| 3924514 | 109.4.1.83 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf | 0.54 | 40.0 | 2.51e-01 | 85.7% | 25.9% |
| 5027686 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.54 | 45.0 | 3.16e-01 | 100.0% | 51.3% |
| 3827882 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 40.0 | 2.51e-01 | 100.0% | 19.4% |
| 3938493 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.53 | 38.0 | 3.10e-01 | 100.0% | 37.8% |
| 3923603 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 44.0 | 2.69e-01 | 100.0% | 27.8% |
| 4655040 | 140.1.1.4 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 | 0.53 | 36.0 | 2.36e-01 | 73.8% | 33.6% |
| 4627870 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.52 | 38.0 | 3.44e-01 | 88.1% | 62.9% |
| 3994831 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.52 | 40.0 | 2.48e-01 | 90.5% | 13.0% |
| 3721713 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 3.67e-01 | 92.9% | 64.3% |
| 3740646 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.52 | 41.0 | 3.49e-01 | 95.2% | 68.8% |
| 5073852 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 41.0 | 3.12e-01 | 100.0% | 72.0% |
| 3795771 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.52 | 36.0 | 2.15e-01 | 76.2% | 8.8% |
| 4013928 | 2003.1.5.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran | 0.52 | 40.0 | 2.48e-01 | 90.5% | 79.2% |
| 4653130 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.52 | 38.0 | 3.11e-01 | 88.1% | 46.3% |
| 3457593 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.52 | 40.0 | 3.26e-01 | 97.6% | 57.0% |
| 4003962 | 11.1.7.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › PEBP-like | 0.50 | 38.0 | 2.53e-01 | 100.0% | 47.7% |
| 4024983 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 38.0 | 3.29e-01 | 95.2% | 58.7% |