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S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00155

Bact-Vir

S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00155

Identity

Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-106
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6idxA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 44.0 3.47e-01 79.2% 58.0%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 43.0 3.18e-01 85.8% 50.0%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 30.0 3.62e-01 79.2% 95.2%
4yozA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 38.0 3.27e-01 82.1% 98.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636356 109.4.1.1243 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mrp13 0.54 40.0 3.13e-01 78.3% 68.3%
3669250 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 39.0 3.42e-01 79.2% 71.5%
3169215 109.4.1.1471 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO5 0.51 39.0 3.10e-01 82.1% 41.7%
4116460 246.2.1.14 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › FBPase_2 0.51 41.0 2.79e-01 92.5% 88.8%
3170173 109.4.1.37 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 0.50 42.0 3.01e-01 93.4% 69.1%
D2 medium residues 107-181
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 45.0 3.41e-01 84.0% 95.7%
2vl7A02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.58 45.0 4.07e-01 86.7% 83.6%
2rijA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 3.52e-01 85.3% 68.1%
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.57 48.0 2.96e-01 96.0% 49.0%
4b3hB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 45.0 3.01e-01 94.7% 86.4%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 39.0 3.43e-01 77.3% 74.8%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.05e-01 92.0% 40.1%
5cxxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.94e-01 92.0% 72.6%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.04e-01 88.0% 100.0%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.50 42.0 2.77e-01 100.0% 52.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079282 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.65 46.0 3.38e-01 74.7% 61.0%
3725391 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 3.19e-01 97.3% 37.6%
4346320 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.59 48.0 3.64e-01 93.3% 46.5%
3575778 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.58 48.0 3.25e-01 93.3% 56.7%
3619305 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.58 48.0 3.28e-01 93.3% 59.7%
4944277 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.57 50.0 3.28e-01 100.0% 53.7%
3694046 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 2.99e-01 76.0% 68.3%
5057213 4040.1.1.7 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic_N 0.56 44.0 2.99e-01 86.7% 78.0%
3919204 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.55 47.0 2.60e-01 100.0% 95.6%
3702758 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 3.36e-01 97.3% 81.4%
3590097 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.52 43.0 3.41e-01 92.0% 93.5%
4026067 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 43.0 2.74e-01 98.7% 87.0%
3621074 109.4.1.353 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N 0.51 43.0 2.59e-01 97.3% 20.0%
4117029 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.51 34.0 3.02e-01 70.7% 58.3%
3581503 109.4.1.1401 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_RPAP1 0.51 42.0 2.79e-01 96.0% 75.7%