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S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00157
Bact-VirS2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00157
Identity
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-159
Domain cluster:
rep: pre1_saliva_scaffold_4_prodigal-single.1__X__X__00034__D5-130
D2
high
residues 160-248
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00042__D330-433
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 46.0 | 4.08e-01 | 71.9% | 58.4% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.66 | 43.0 | 2.94e-01 | 85.4% | 20.8% |
| 6ro0D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 44.0 | 4.11e-01 | 71.9% | 100.0% |
| 3e38A02 | 2.60.40.3090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 45.0 | 4.73e-01 | 76.4% | 82.3% |
| 2x3aA01 | 2.60.40.2970 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 42.0 | 3.75e-01 | 74.2% | 69.5% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 41.0 | 3.46e-01 | 83.1% | 43.2% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 39.0 | 3.45e-01 | 80.9% | 48.1% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 38.0 | 3.32e-01 | 85.4% | 47.0% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 32.0 | 3.43e-01 | 97.8% | 62.8% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 43.0 | 3.76e-01 | 87.6% | 85.9% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.55 | 38.0 | 3.69e-01 | 74.2% | 81.9% |
| 3bvxA05 | 2.60.40.1360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 38.0 | 3.80e-01 | 74.2% | 92.7% |
| 2g1dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 37.0 | 3.67e-01 | 92.1% | 67.3% |
| 3ecqA01 | 2.60.120.870 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 3.58e-01 | 97.8% | 86.3% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 31.0 | 3.72e-01 | 79.8% | 93.1% |
| 3wy2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 34.0 | 3.72e-01 | 71.9% | 87.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033330 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 47.0 | 4.42e-01 | 73.0% | 68.5% |
| 3970564 | 11.1.1.1362 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3426 | 0.66 | 46.0 | 4.48e-01 | 73.0% | 83.0% |
| 3693056 | 11.1.1.964 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26174 | 0.65 | 46.0 | 3.78e-01 | 73.0% | 60.6% |
| 3587590 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.64 | 46.0 | 4.36e-01 | 74.2% | 79.0% |
| 3385857 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 42.0 | 4.20e-01 | 71.9% | 66.7% |
| 3724413 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 45.0 | 4.14e-01 | 75.3% | 73.9% |
| 3785358 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.59 | 41.0 | 3.60e-01 | 71.9% | 62.3% |
| 3507768 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 46.0 | 4.44e-01 | 83.1% | 77.0% |
| 3183713 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.57 | 40.0 | 3.59e-01 | 73.0% | 62.4% |
| 3275868 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 33.0 | 3.53e-01 | 80.9% | 65.0% |
| 3856363 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 45.0 | 3.50e-01 | 84.3% | 50.3% |
| 3473466 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 48.0 | 3.51e-01 | 94.4% | 42.6% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.55 | 39.0 | 3.84e-01 | 73.0% | 83.2% |
| 3540860 | 2003.1.2.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8, Pyr_redox_3 | 0.55 | 44.0 | 2.82e-01 | 87.6% | 40.0% |
| 3777863 | 2003.1.3.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8, Pyr_redox_3 | 0.55 | 44.0 | 2.80e-01 | 87.6% | 39.8% |
| 3459363 | 243.3.1.74 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF1668 | 0.54 | 41.0 | 4.25e-01 | 80.9% | 89.4% |
| 3264478 | 11.1.1.793 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 | 0.53 | 38.0 | 3.59e-01 | 73.0% | 68.6% |
| 3636567 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 44.0 | 3.23e-01 | 87.6% | 42.3% |
| 4928967 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 48.0 | 4.13e-01 | 100.0% | 97.1% |
| 3267253 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 3.51e-01 | 73.0% | 65.3% |
| 3963029 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 37.0 | 3.78e-01 | 82.0% | 77.6% |
| 3903732 | 11.1.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C | 0.51 | 35.0 | 3.71e-01 | 73.0% | 86.1% |
| 5053256 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.51 | 39.0 | 3.50e-01 | 82.0% | 79.2% |
| 4644245 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.51 | 44.0 | 3.25e-01 | 100.0% | 67.5% |
| 4013494 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 46.0 | 3.90e-01 | 100.0% | 89.0% |
| 3186632 | 11.1.1.507 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3712 | 0.51 | 45.0 | 3.89e-01 | 97.8% | 93.3% |
| 3725605 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.50 | 35.0 | 2.93e-01 | 73.0% | 67.3% |