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S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00262

Bact-Vir

S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00262

Identity

Kingdom:
phage

Quality

51.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 150-222
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 42.0 3.81e-01 71.2% 98.0%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.60 33.0 2.83e-01 89.0% 33.3%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.58 35.0 3.98e-01 84.9% 93.5%
2gwcA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.57 48.0 3.07e-01 100.0% 68.7%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.57 33.0 3.43e-01 78.1% 59.1%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 40.0 3.33e-01 75.3% 93.0%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.09e-01 97.3% 71.4%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 38.0 3.16e-01 75.3% 84.6%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.57e-01 84.9% 69.6%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 46.0 3.98e-01 100.0% 78.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.76e-01 83.6% 80.3%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.51 28.0 3.09e-01 89.0% 67.3%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.61e-01 84.9% 66.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034583 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.67 31.0 3.70e-01 83.6% 62.0%
5031010 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 47.0 4.85e-01 76.7% 92.9%
5052959 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 44.0 4.89e-01 74.0% 92.7%
5026837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.64e-01 97.3% 74.4%
4933261 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 48.0 4.19e-01 97.3% 94.2%
4998585 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.57 40.0 3.45e-01 74.0% 92.5%
5014020 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.57 27.0 3.27e-01 82.2% 66.7%
5022607 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 34.0 2.38e-01 94.5% 17.6%
4212381 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.55 40.0 3.36e-01 78.1% 88.9%
4998571 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.18e-01 74.0% 43.8%
3169674 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 43.0 3.08e-01 100.0% 72.7%
4946414 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.51 38.0 3.28e-01 100.0% 48.0%
D2 medium residues 4-147
PDB