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S2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00115
Bact-VirS2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00115
Identity
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-89
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.60 | 43.0 | 3.13e-01 | 75.3% | 91.2% |
| 5tuuA00 | 1.20.140.80 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Transcription factor DP | 0.57 | 50.0 | 4.33e-01 | 100.0% | 73.6% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 28.0 | 2.70e-01 | 70.8% | 39.1% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 27.0 | 3.13e-01 | 70.8% | 71.4% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.50 | 25.0 | 3.19e-01 | 74.2% | 82.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943722 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.78 | 43.0 | 2.66e-01 | 93.3% | 11.2% |
| 3379082 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.75 | 45.0 | 2.66e-01 | 100.0% | 8.8% |
| 3567388 | 4154.1.1.2 ↗ | beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F_CC-MB | 0.74 | 40.0 | 3.79e-01 | 94.4% | 44.8% |
| 3241258 | 4154.1.1.1 ↗ | beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP | 0.58 | 52.0 | 4.39e-01 | 98.9% | 78.0% |
| 3204926 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.54 | 31.0 | 3.41e-01 | 76.4% | 70.0% |
| 3407973 | 59.1.2.2 ↗ | beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Ydr279_N | 0.53 | 28.0 | 3.04e-01 | 70.8% | 57.3% |
| 3741170 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.53 | 44.0 | 3.06e-01 | 92.1% | 93.8% |
| 3623796 | 4154.1.1.1 ↗ | beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › DP | 0.53 | 46.0 | 3.96e-01 | 100.0% | 72.7% |
| 3459267 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.52 | 41.0 | 2.82e-01 | 87.6% | 85.2% |