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S2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00138
Bact-VirS2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00138
Identity
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
rep: S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00147__D4-72
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8badA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.70 | 62.0 | 4.67e-01 | 100.0% | 99.3% |
| 3zx7A02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.69 | 60.0 | 4.66e-01 | 100.0% | 96.4% |
| 1upsA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.69 | 59.0 | 4.66e-01 | 100.0% | 97.7% |
| 3vsfA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.68 | 58.0 | 4.54e-01 | 100.0% | 99.3% |
| 1afcA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.68 | 57.0 | 4.60e-01 | 98.3% | 100.0% |
| 3pubA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.68 | 58.0 | 4.32e-01 | 98.3% | 94.4% |
| 4izxA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.67 | 57.0 | 4.47e-01 | 100.0% | 95.7% |
| 3q7yA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.67 | 56.0 | 4.56e-01 | 98.3% | 100.0% |
| 4jp0A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.67 | 58.0 | 4.45e-01 | 100.0% | 95.1% |
| 3a07B00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.67 | 56.0 | 4.56e-01 | 96.7% | 96.6% |
| 1dqgA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.66 | 56.0 | 4.46e-01 | 100.0% | 91.8% |
| 6lciA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.66 | 55.0 | 4.23e-01 | 95.0% | 100.0% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.65 | 55.0 | 4.44e-01 | 98.3% | 97.6% |
| 1nunA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.65 | 56.0 | 4.36e-01 | 100.0% | 93.5% |
| 1jlxA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.65 | 56.0 | 4.18e-01 | 100.0% | 95.6% |
| 2fdbN00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.65 | 55.0 | 4.26e-01 | 100.0% | 86.5% |
| 5g56A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.64 | 54.0 | 4.33e-01 | 96.7% | 100.0% |
| 2y9fA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.64 | 54.0 | 4.17e-01 | 100.0% | 93.3% |
| 4gp0B02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.62 | 52.0 | 4.27e-01 | 100.0% | 99.2% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.60 | 53.0 | 4.57e-01 | 100.0% | 64.1% |
| 1go4A00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.56 | 39.0 | 2.80e-01 | 75.0% | 65.3% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.54 | 35.0 | 3.51e-01 | 100.0% | 66.1% |
| 1p6oA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 39.0 | 3.05e-01 | 88.3% | 84.6% |
| 3s83A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.50 | 42.0 | 2.86e-01 | 100.0% | 86.7% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4104807 | 6.1.1.43 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Beta-tre_PLH30 | 0.70 | 60.0 | 4.68e-01 | 98.3% | 99.3% |
| 4458802 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.69 | 59.0 | 4.51e-01 | 96.7% | 98.6% |
| 4168024 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.69 | 60.0 | 4.61e-01 | 100.0% | 94.3% |
| 2132 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.69 | 59.0 | 4.68e-01 | 100.0% | 99.2% |
| 3423580 | 6.1.1.25 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 | 0.67 | 59.0 | 4.27e-01 | 100.0% | 89.7% |
| 3642361 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.67 | 57.0 | 4.30e-01 | 98.3% | 98.1% |
| 3435674 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.67 | 57.0 | 4.29e-01 | 100.0% | 93.1% |
| 3646122 | 6.1.1.25 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 | 0.67 | 58.0 | 4.25e-01 | 100.0% | 94.1% |
| 3471759 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.66 | 56.0 | 4.53e-01 | 98.3% | 97.6% |
| 3421912 | 6.1.1.25 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 | 0.66 | 56.0 | 4.21e-01 | 100.0% | 95.6% |
| 3885404 | 6.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF | 0.66 | 57.0 | 4.29e-01 | 100.0% | 84.5% |
| 3249251 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.66 | 57.0 | 4.43e-01 | 100.0% | 87.7% |
| 3390286 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.66 | 55.0 | 4.46e-01 | 98.3% | 96.8% |
| 1844304 | 6.1.1.19 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 | 0.66 | 57.0 | 4.41e-01 | 100.0% | 91.4% |
| 3587697 | 11.1.4.36 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA | 0.63 | 54.0 | 4.19e-01 | 100.0% | 48.6% |
| 3681330 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.61 | 51.0 | 4.51e-01 | 96.7% | 100.0% |
| 3966660 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.59 | 40.0 | 3.20e-01 | 71.7% | 60.0% |
| 3691111 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 50.0 | 3.68e-01 | 98.3% | 85.0% |
| 4978960 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.54 | 37.0 | 3.11e-01 | 71.7% | 70.4% |
D2
high
residues 71-169
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sc6A03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.70 | 54.0 | 5.89e-01 | 80.8% | 100.0% |
| 1s48A04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.66 | 51.0 | 4.88e-01 | 80.8% | 83.8% |
| 3bc8A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.63 | 48.0 | 3.66e-01 | 80.8% | 87.0% |
| 3aawA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.60 | 51.0 | 4.32e-01 | 93.9% | 73.9% |
| 2cqhA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 45.0 | 4.60e-01 | 100.0% | 87.1% |
| 4k22B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 40.0 | 3.03e-01 | 75.8% | 89.8% |
| 4zdoB00 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 44.0 | 2.87e-01 | 87.9% | 59.2% |
| 3to8A02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 42.0 | 4.32e-01 | 83.8% | 91.7% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 36.0 | 2.86e-01 | 70.7% | 49.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3739629 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.69 | 48.0 | 4.69e-01 | 71.7% | 75.5% |
| 3709243 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.69 | 49.0 | 4.80e-01 | 72.7% | 79.0% |
| 3195477 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.69 | 48.0 | 4.56e-01 | 72.7% | 71.2% |
| 4023169 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.68 | 48.0 | 4.80e-01 | 72.7% | 84.0% |
| 1175882 | 304.154.1.1 ↗ | a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain › GGDEF_2 | 0.66 | 50.0 | 4.31e-01 | 79.8% | 67.3% |
| 3893902 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.66 | 55.0 | 5.31e-01 | 92.9% | 87.8% |
| 4964356 | 304.8.1.125 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7523 | 0.66 | 50.0 | 4.82e-01 | 92.9% | 72.5% |
| 3974380 | 304.154.1.0 ↗ | a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain | 0.64 | 47.0 | 4.28e-01 | 77.8% | 65.2% |
| 3712597 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.59 | 47.0 | 4.93e-01 | 98.0% | 94.4% |
| 4452423 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 46.0 | 4.55e-01 | 100.0% | 80.0% |
| 3515653 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 46.0 | 4.90e-01 | 90.9% | 97.6% |
| 3579230 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.57 | 47.0 | 3.32e-01 | 88.9% | 87.9% |
| 3762475 | 3860.1.1.131 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Myosin_head | 0.57 | 47.0 | 2.94e-01 | 88.9% | 51.4% |
| 3352545 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.57 | 44.0 | 4.49e-01 | 96.0% | 86.3% |
| 3476964 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 46.0 | 4.37e-01 | 98.0% | 77.4% |
| 3829731 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 40.0 | 4.07e-01 | 94.9% | 81.0% |
| 5036563 | 304.137.1.3 ↗ | a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain › RsmF-B_ferredox | 0.52 | 40.0 | 3.76e-01 | 99.0% | 67.5% |
| 4546707 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 39.0 | 2.77e-01 | 99.0% | 26.4% |
| 3310307 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 38.0 | 3.97e-01 | 97.0% | 90.0% |
| 3299123 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.51 | 38.0 | 4.00e-01 | 97.0% | 91.1% |
| 4146058 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 44.0 | 3.97e-01 | 98.0% | 78.6% |