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S2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00183
Bact-VirS2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00183
Identity
- Kingdom:
- phage
Quality
93.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-123
Domain cluster:
rep: BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00105__D25-124
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 34.0 | 4.18e-01 | 97.4% | 74.0% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 30.0 | 4.36e-01 | 88.9% | 98.0% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.67 | 32.0 | 3.28e-01 | 98.3% | 45.1% |
| 3nmzD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 37.0 | 4.29e-01 | 98.3% | 81.0% |
| 1sf9A02 | 2.30.30.340 | Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains | 0.62 | 29.0 | 4.07e-01 | 95.7% | 94.4% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 32.0 | 4.08e-01 | 77.8% | 90.5% |
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 29.0 | 3.60e-01 | 76.9% | 75.7% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.58 | 33.0 | 3.41e-01 | 98.3% | 59.6% |
| 1fouA02 | 2.40.500.10 | Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) | 0.55 | 39.0 | 3.80e-01 | 88.0% | 65.2% |
| 2ot2A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 29.0 | 3.89e-01 | 76.1% | 100.0% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.67e-01 | 93.2% | 81.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4429179 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.75 | 30.0 | 4.69e-01 | 94.9% | 97.8% |
| 4225207 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.75 | 31.0 | 4.22e-01 | 94.9% | 75.0% |
| 5054668 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 29.0 | 4.53e-01 | 95.7% | 95.6% |
| 3945489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 30.0 | 4.53e-01 | 94.9% | 96.0% |
| 4305196 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.70 | 30.0 | 4.57e-01 | 87.2% | 96.0% |
| 1807495 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 29.0 | 3.99e-01 | 87.2% | 84.9% |
| 3976834 | 4.1.1.156 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2158 | 0.65 | 29.0 | 4.33e-01 | 94.9% | 100.0% |
| 3742291 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 35.0 | 4.56e-01 | 74.4% | 100.0% |
| 4963446 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 30.0 | 3.86e-01 | 96.6% | 95.4% |
| 3839028 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 30.0 | 3.90e-01 | 76.9% | 96.9% |
| 3386763 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 29.0 | 3.75e-01 | 76.9% | 95.4% |
D2
medium
residues 126-321
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.68 | 36.0 | 4.62e-01 | 76.5% | 86.8% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.63 | 36.0 | 4.02e-01 | 77.6% | 69.3% |
| 1xioA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 46.0 | 4.51e-01 | 89.3% | 76.0% |
| 8anqA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 48.0 | 4.58e-01 | 91.3% | 79.0% |
| 3am6A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 44.0 | 4.21e-01 | 90.3% | 74.6% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.53 | 33.0 | 3.51e-01 | 71.4% | 68.4% |
| 2epkX03 | 1.20.120.670 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase | 0.53 | 47.0 | 4.52e-01 | 96.4% | 96.0% |
| 2vpzC00 | 1.20.1630.10 | Mainly Alpha › Up-down Bundle › Formate dehydrogenase/DMSO reductase fold › Formate dehydrogenase/DMSO reductase domain | 0.52 | 44.0 | 4.04e-01 | 88.3% | 90.4% |
| 1a52A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 36.0 | 3.43e-01 | 70.9% | 76.6% |
| 4unfA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.51 | 25.0 | 3.13e-01 | 92.3% | 75.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951175 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 40.0 | 3.95e-01 | 77.0% | 64.3% |
| 3231048 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.58 | 34.0 | 3.97e-01 | 78.1% | 80.0% |
| 3553092 | 601.1.2.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ | 0.57 | 46.0 | 4.73e-01 | 84.7% | 96.8% |
| 3974411 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.56 | 42.0 | 4.13e-01 | 75.5% | 80.0% |
| 3023248 | 5001.1.1.6 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin | 0.56 | 48.0 | 4.54e-01 | 89.8% | 78.5% |
| 4939310 | 5045.1.1.3 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I | 0.56 | 36.0 | 2.99e-01 | 82.7% | 37.6% |
| 4649278 | 109.4.1.1375 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_SYVN1_N | 0.55 | 48.0 | 4.34e-01 | 98.0% | 68.7% |
| 3734583 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.54 | 38.0 | 3.66e-01 | 71.4% | 92.6% |
| 3192478 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 33.0 | 3.21e-01 | 78.1% | 55.5% |
| 3859646 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.51 | 44.0 | 3.20e-01 | 93.4% | 87.3% |
| 5041595 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.51 | 40.0 | 3.96e-01 | 90.3% | 78.0% |
| 4012895 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.50 | 35.0 | 3.25e-01 | 70.4% | 91.9% |