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S2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00245
Bact-VirS2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00245
Identity
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-126
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015342__D1-41_94-160
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21001.3 best | YqiJ_N | 81.9 | 5.60e-23 | 85.7% | 99.1% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.63 | 40.0 | 4.03e-01 | 92.1% | 62.3% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.62 | 34.0 | 3.76e-01 | 85.7% | 65.0% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 40.0 | 3.97e-01 | 88.1% | 60.4% |
| 5y06A01 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 41.0 | 3.32e-01 | 73.0% | 37.1% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.61 | 37.0 | 3.83e-01 | 88.1% | 63.9% |
| 4i5jA01 | 1.10.238.220 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.61 | 33.0 | 3.52e-01 | 84.9% | 59.6% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 38.0 | 4.27e-01 | 71.4% | 80.0% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 45.0 | 3.50e-01 | 100.0% | 34.7% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.59 | 38.0 | 3.87e-01 | 89.7% | 65.6% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 35.0 | 4.14e-01 | 94.4% | 87.4% |
| 7eq1R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 49.0 | 3.76e-01 | 96.0% | 40.7% |
| 6kd7A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 47.0 | 3.49e-01 | 100.0% | 33.6% |
| 7m2wE01 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.58 | 50.0 | 3.78e-01 | 95.2% | 98.7% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.58 | 32.0 | 3.28e-01 | 91.3% | 52.0% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.57 | 31.0 | 3.49e-01 | 75.4% | 67.0% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 38.0 | 3.80e-01 | 72.2% | 67.7% |
| 3q23A04 | 6.10.140.1370 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 25.0 | 2.91e-01 | 92.1% | 56.0% |
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 42.0 | 4.07e-01 | 87.3% | 72.5% |
| 1wbeA01 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.54 | 48.0 | 4.23e-01 | 98.4% | 93.0% |
| 7wivA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 2.86e-01 | 76.2% | 30.0% |
| 7ys6A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 48.0 | 3.77e-01 | 99.2% | 80.9% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 33.0 | 3.88e-01 | 97.6% | 95.1% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.53 | 41.0 | 4.34e-01 | 87.3% | 91.2% |
| 1kf6D00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.52 | 41.0 | 4.20e-01 | 92.1% | 88.2% |
| 4axzA00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.50 | 41.0 | 3.46e-01 | 88.9% | 87.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976839 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.93 | 72.0 | 8.12e-01 | 98.4% | 100.0% |
| 3173999 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.73 | 46.0 | 5.10e-01 | 96.8% | 80.0% |
| 4040950 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.69 | 44.0 | 4.61e-01 | 93.7% | 70.8% |
| 3259643 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.63 | 56.0 | 3.53e-01 | 96.0% | 47.4% |
| 3323926 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.62 | 47.0 | 5.26e-01 | 97.6% | 100.0% |
| 3717477 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.61 | 37.0 | 4.51e-01 | 91.3% | 95.0% |
| 3227811 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.59 | 47.0 | 4.45e-01 | 96.0% | 70.3% |
| 3804317 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.59 | 42.0 | 4.46e-01 | 96.8% | 84.1% |
| 3606235 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.59 | 41.0 | 3.71e-01 | 72.2% | 62.9% |
| 3711195 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.57 | 41.0 | 4.40e-01 | 95.2% | 86.4% |
| 3582594 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.56 | 50.0 | 4.22e-01 | 98.4% | 67.9% |
| 5028184 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.55 | 49.0 | 4.01e-01 | 100.0% | 51.4% |
| 4032276 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.55 | 50.0 | 4.26e-01 | 100.0% | 95.1% |
| 4987661 | 5076.2.1.13 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 | 0.54 | 46.0 | 3.80e-01 | 100.0% | 50.4% |
| 4935724 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.54 | 49.0 | 3.99e-01 | 100.0% | 53.9% |
| 5010209 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.54 | 42.0 | 3.55e-01 | 100.0% | 49.5% |
| 3926252 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 40.0 | 3.67e-01 | 100.0% | 61.2% |
| 3588332 | 5069.1.1.23 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF2798 | 0.52 | 40.0 | 3.87e-01 | 95.2% | 71.4% |
| 3624863 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.52 | 45.0 | 3.55e-01 | 95.2% | 66.0% |
| 3611610 | 1075.5.1.5 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 | 0.52 | 46.0 | 3.70e-01 | 98.4% | 82.0% |
| 3181376 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.51 | 44.0 | 3.33e-01 | 96.0% | 39.4% |
| 4947397 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.51 | 46.0 | 3.83e-01 | 98.4% | 88.4% |
| 4218530 | 5038.2.1.1 ↗ | alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG | 0.51 | 41.0 | 4.08e-01 | 88.1% | 82.2% |
| 4291582 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.50 | 42.0 | 3.40e-01 | 89.7% | 52.5% |
D2
high
residues 137-204
Domain cluster:
rep: IMGVR_UViG_3300010357_001933-3300010357-Ga0116249_100039732__D122-179
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07290.18 best | YqiJ_OB | 33.8 | 3.90e-08 | 94.1% | 90.6% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wwvA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.89 | 74.0 | 7.66e-01 | 100.0% | 93.8% |
| 2k14A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.86 | 75.0 | 6.95e-01 | 100.0% | 76.2% |
| 2qw7C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.70 | 60.0 | 5.32e-01 | 92.6% | 85.3% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 48.0 | 5.54e-01 | 72.1% | 98.0% |
| 6aqgA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 60.0 | 4.80e-01 | 100.0% | 68.1% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.69 | 53.0 | 5.37e-01 | 82.4% | 88.1% |
| 2wfwB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 56.0 | 5.65e-01 | 94.1% | 89.6% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 59.0 | 5.69e-01 | 97.1% | 93.5% |
| 4me3A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 60.0 | 5.36e-01 | 100.0% | 90.7% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 57.0 | 5.38e-01 | 94.1% | 91.4% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.67 | 52.0 | 5.20e-01 | 83.8% | 100.0% |
| 3bdlA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 60.0 | 4.48e-01 | 100.0% | 64.5% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 58.0 | 4.84e-01 | 100.0% | 69.1% |
| 3wbiA04 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 47.0 | 3.69e-01 | 76.5% | 71.7% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 50.0 | 4.27e-01 | 85.3% | 98.2% |
| 6ro0F00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 54.0 | 4.87e-01 | 98.5% | 89.8% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 39.0 | 3.86e-01 | 100.0% | 58.3% |
| 1iyjB04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 54.0 | 4.36e-01 | 100.0% | 63.0% |
| 1xjvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 53.0 | 4.28e-01 | 100.0% | 62.7% |
| 1jb7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 51.0 | 4.35e-01 | 100.0% | 70.7% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 50.0 | 4.29e-01 | 98.5% | 84.5% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 48.0 | 3.76e-01 | 94.1% | 55.3% |
| 6jy5B00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.58 | 48.0 | 4.56e-01 | 94.1% | 91.5% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.57 | 42.0 | 4.52e-01 | 94.1% | 91.4% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 46.0 | 4.04e-01 | 89.7% | 100.0% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 35.0 | 3.24e-01 | 83.8% | 46.2% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 40.0 | 4.24e-01 | 98.5% | 85.2% |
| 4bwgD00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 44.0 | 4.03e-01 | 91.2% | 86.6% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 44.0 | 3.65e-01 | 89.7% | 94.6% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 40.0 | 3.02e-01 | 77.9% | 42.9% |
| 1xdiA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 40.0 | 2.83e-01 | 80.9% | 80.7% |
| 3iujA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.53 | 35.0 | 2.28e-01 | 91.2% | 13.6% |
| 3bm4A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 42.0 | 3.08e-01 | 89.7% | 63.5% |
| 1u4dA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 46.0 | 4.33e-01 | 100.0% | 92.8% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.51 | 36.0 | 3.17e-01 | 91.2% | 49.5% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.51 | 42.0 | 2.99e-01 | 95.6% | 88.0% |
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 41.0 | 3.13e-01 | 92.6% | 57.1% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.63e-01 | 94.1% | 79.4% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.50 | 29.0 | 3.18e-01 | 92.6% | 71.2% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.50 | 35.0 | 2.55e-01 | 73.5% | 95.4% |
| 2bvbA00 | 2.60.120.710 | Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 | 0.50 | 35.0 | 2.82e-01 | 73.5% | 46.7% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976838 | 2.1.1.295 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › YqiJ_OB | 0.93 | 87.0 | 8.16e-01 | 100.0% | 83.7% |
| 5071470 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.93 | 76.0 | 7.55e-01 | 100.0% | 82.9% |
| 4221644 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.90 | 74.0 | 7.38e-01 | 100.0% | 84.3% |
| 3969564 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.88 | 80.0 | 7.92e-01 | 100.0% | 94.3% |
| 3963655 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.84 | 66.0 | 6.81e-01 | 98.5% | 89.2% |
| 3594041 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 63.0 | 6.44e-01 | 94.1% | 93.8% |
| 4677730 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.72 | 62.0 | 6.39e-01 | 100.0% | 100.0% |
| 3963716 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 63.0 | 5.40e-01 | 100.0% | 90.0% |
| 5039189 | 2.1.1.287 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS | 0.71 | 63.0 | 4.83e-01 | 98.5% | 50.3% |
| 3970847 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 62.0 | 6.18e-01 | 100.0% | 95.7% |
| 3389015 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 60.0 | 5.29e-01 | 94.1% | 74.0% |
| 3283412 | 2.1.1.98 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNase_II_C_S1 | 0.70 | 57.0 | 6.07e-01 | 95.6% | 100.0% |
| 3652178 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.70 | 63.0 | 4.75e-01 | 100.0% | 61.3% |
| 5045871 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.70 | 62.0 | 6.21e-01 | 97.1% | 100.0% |
| 4092289 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.70 | 62.0 | 6.33e-01 | 97.1% | 100.0% |
| 3346797 | 2.1.1.71 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TTC5_OB | 0.70 | 62.0 | 4.94e-01 | 100.0% | 67.1% |
| 4221404 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.70 | 62.0 | 5.88e-01 | 98.5% | 92.5% |
| 4347147 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.70 | 62.0 | 5.92e-01 | 100.0% | 91.3% |
| 4262785 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.69 | 62.0 | 5.92e-01 | 100.0% | 93.8% |
| 4194126 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.69 | 61.0 | 5.82e-01 | 98.5% | 91.3% |
| 4440734 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 58.0 | 5.99e-01 | 98.5% | 96.9% |
| 3967545 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.69 | 61.0 | 4.59e-01 | 97.1% | 83.1% |
| 3953859 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 59.0 | 6.01e-01 | 97.1% | 96.9% |
| 3236144 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 61.0 | 5.22e-01 | 100.0% | 83.6% |
| 3604459 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.69 | 62.0 | 5.27e-01 | 100.0% | 80.0% |
| 3239000 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 61.0 | 4.94e-01 | 100.0% | 71.5% |
| 3969377 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 60.0 | 5.87e-01 | 94.1% | 87.8% |
| 3985171 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.69 | 61.0 | 4.76e-01 | 97.1% | 96.4% |
| 4402425 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.69 | 61.0 | 6.11e-01 | 98.5% | 94.3% |
| 4141240 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.69 | 61.0 | 5.84e-01 | 100.0% | 91.3% |
| 4341423 | 2.1.1.279 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4131 | 0.69 | 60.0 | 5.04e-01 | 100.0% | 80.8% |
| 4237578 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.69 | 55.0 | 4.54e-01 | 86.8% | 93.3% |
| 3935835 | 2.1.1.68 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C | 0.69 | 60.0 | 4.81e-01 | 100.0% | 83.6% |
| 4311691 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.69 | 59.0 | 4.66e-01 | 94.1% | 89.6% |
| 3226147 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.68 | 58.0 | 5.45e-01 | 95.6% | 85.9% |
| 4061669 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.68 | 60.0 | 5.72e-01 | 98.5% | 91.3% |
| 4395120 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.68 | 58.0 | 5.83e-01 | 97.1% | 92.8% |
| 4968816 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.68 | 61.0 | 5.43e-01 | 100.0% | 93.7% |
| 5074506 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.68 | 61.0 | 5.46e-01 | 100.0% | 85.1% |
| 4236717 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.68 | 58.0 | 4.77e-01 | 94.1% | 99.2% |
| 4606688 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.68 | 52.0 | 5.07e-01 | 82.4% | 78.7% |
| 4886624 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.68 | 60.0 | 5.70e-01 | 100.0% | 95.0% |
| 3826195 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.68 | 59.0 | 5.26e-01 | 100.0% | 85.0% |
| 3962096 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 59.0 | 4.65e-01 | 97.1% | 48.1% |
| 4240811 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.67 | 60.0 | 5.58e-01 | 100.0% | 90.6% |
| 4935709 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.67 | 58.0 | 5.11e-01 | 100.0% | 79.0% |
| 4983389 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.67 | 51.0 | 5.25e-01 | 80.9% | 86.2% |
| 4944219 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.67 | 58.0 | 4.69e-01 | 94.1% | 92.8% |
| 3967128 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.67 | 54.0 | 5.38e-01 | 86.8% | 100.0% |
| 4235194 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.66 | 54.0 | 4.41e-01 | 88.2% | 84.8% |
| 4236900 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.66 | 54.0 | 4.33e-01 | 88.2% | 90.7% |
| 4165211 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.66 | 54.0 | 4.20e-01 | 88.2% | 94.5% |
| 4943144 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 60.0 | 5.47e-01 | 100.0% | 92.0% |
| 3970503 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.66 | 54.0 | 4.34e-01 | 88.2% | 94.6% |
| 4998346 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.66 | 57.0 | 4.57e-01 | 94.1% | 90.8% |
| 4391061 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.66 | 54.0 | 4.45e-01 | 88.2% | 92.5% |
| 3784708 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.66 | 57.0 | 5.34e-01 | 97.1% | 91.8% |
| 3783321 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.65 | 55.0 | 4.51e-01 | 100.0% | 72.1% |
| 3988584 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.65 | 53.0 | 4.67e-01 | 88.2% | 96.0% |
| 5010568 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.65 | 58.0 | 5.21e-01 | 100.0% | 86.3% |
| 5024446 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.65 | 57.0 | 5.22e-01 | 100.0% | 93.3% |
| 4451633 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.64 | 52.0 | 4.22e-01 | 88.2% | 92.3% |
| 4190716 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.64 | 51.0 | 4.31e-01 | 86.8% | 85.2% |
| 4497740 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.64 | 46.0 | 4.85e-01 | 94.1% | 86.7% |
| 3988828 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.64 | 52.0 | 4.27e-01 | 88.2% | 88.3% |
| 3282644 | 2.24.1.2 ↗ | beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 | 0.63 | 54.0 | 5.50e-01 | 98.5% | 98.5% |
| 3468143 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 55.0 | 4.22e-01 | 100.0% | 60.0% |
| 3969569 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.62 | 45.0 | 4.79e-01 | 94.1% | 88.3% |
| 3802091 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.62 | 55.0 | 4.34e-01 | 100.0% | 66.2% |
| 3959123 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.62 | 53.0 | 4.68e-01 | 100.0% | 81.9% |
| 3673266 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 45.0 | 4.21e-01 | 79.4% | 75.3% |
| 4049072 | 2.4.1.6 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal | 0.61 | 48.0 | 4.12e-01 | 86.8% | 94.5% |
| 4211209 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.61 | 45.0 | 4.59e-01 | 95.6% | 81.5% |
| 4927010 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.60 | 45.0 | 3.69e-01 | 80.9% | 85.6% |
| 3645444 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 50.0 | 4.16e-01 | 92.6% | 95.0% |
| 4456732 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.59 | 44.0 | 4.21e-01 | 95.6% | 67.5% |
| 3180337 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 48.0 | 3.74e-01 | 100.0% | 65.5% |
| 4099964 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.56 | 42.0 | 4.32e-01 | 95.6% | 83.1% |
| 4526883 | 2.1.1.24 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE | 0.56 | 47.0 | 4.08e-01 | 98.5% | 76.5% |
| 4625348 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.56 | 41.0 | 4.34e-01 | 97.1% | 91.7% |
| 3576300 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.56 | 45.0 | 3.36e-01 | 91.2% | 61.6% |
| 3543640 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.53 | 42.0 | 3.32e-01 | 89.7% | 64.5% |
| 4129953 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.52 | 39.0 | 3.97e-01 | 95.6% | 83.1% |
| 4068978 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 39.0 | 3.82e-01 | 97.1% | 74.7% |
| 4440818 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.52 | 40.0 | 3.58e-01 | 85.3% | 89.0% |
| 3811166 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.52 | 41.0 | 2.79e-01 | 94.1% | 21.8% |
| 4127839 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 39.0 | 3.79e-01 | 97.1% | 74.7% |
| 4408024 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.51 | 37.0 | 3.83e-01 | 98.5% | 88.3% |
| 4087673 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.51 | 40.0 | 3.61e-01 | 88.2% | 93.0% |
| 4230153 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.50 | 39.0 | 3.74e-01 | 91.2% | 90.6% |