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S2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00348
Bact-VirS2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00348
Identity
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-96
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.66 | 55.0 | 5.21e-01 | 100.0% | 76.0% |
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 51.0 | 5.01e-01 | 93.5% | 79.1% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 42.0 | 3.71e-01 | 100.0% | 44.6% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.63 | 53.0 | 4.55e-01 | 91.9% | 58.9% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 55.0 | 4.25e-01 | 100.0% | 50.4% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.61 | 40.0 | 3.08e-01 | 93.5% | 29.3% |
| 1wc1C00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.61 | 49.0 | 3.45e-01 | 87.1% | 44.3% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.60 | 48.0 | 3.38e-01 | 87.1% | 43.7% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.60 | 52.0 | 3.95e-01 | 100.0% | 45.7% |
| 3p0tA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.60 | 49.0 | 3.81e-01 | 98.4% | 41.2% |
| 4a2bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 47.0 | 3.73e-01 | 90.3% | 40.6% |
| 3k6jA02 | 1.10.1040.50 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.59 | 45.0 | 3.10e-01 | 80.6% | 67.8% |
| 4ipeB02 | 3.30.230.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.59 | 52.0 | 3.86e-01 | 100.0% | 53.3% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.59 | 40.0 | 4.43e-01 | 93.5% | 100.0% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 52.0 | 3.23e-01 | 100.0% | 21.0% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 38.0 | 3.18e-01 | 88.7% | 38.4% |
| 1o6zA01 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.57 | 46.0 | 3.38e-01 | 87.1% | 46.6% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.57 | 49.0 | 3.35e-01 | 100.0% | 83.5% |
| 3vxvA00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.57 | 32.0 | 3.22e-01 | 82.3% | 50.8% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 47.0 | 3.72e-01 | 96.8% | 65.5% |
| 5xd7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 45.0 | 3.74e-01 | 98.4% | 70.1% |
| 2i6tA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.55 | 50.0 | 3.72e-01 | 100.0% | 82.9% |
| 3eehA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 37.0 | 3.12e-01 | 90.3% | 37.9% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 38.0 | 3.10e-01 | 95.2% | 38.5% |
| 2opjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 37.0 | 3.38e-01 | 87.1% | 51.2% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.54 | 43.0 | 3.04e-01 | 93.5% | 83.4% |
| 3h9wA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 37.0 | 3.23e-01 | 96.8% | 44.0% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.53 | 39.0 | 2.78e-01 | 79.0% | 46.8% |
| 4dduA07 | 2.60.510.20 | Mainly Beta › Sandwich › EV matrix protein fold › | 0.52 | 39.0 | 3.31e-01 | 98.4% | 47.7% |
| 3u04A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.52 | 43.0 | 3.22e-01 | 96.8% | 43.6% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.78e-01 | 85.5% | 73.5% |
| 2pn1A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 41.0 | 3.34e-01 | 88.7% | 45.8% |
| 5koxA02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.34e-01 | 77.4% | 82.6% |
| 3kreA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 44.0 | 3.44e-01 | 100.0% | 58.6% |
| 1gesA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.50 | 31.0 | 2.62e-01 | 90.3% | 33.6% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 39.0 | 3.43e-01 | 90.3% | 95.0% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028346 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 52.0 | 5.35e-01 | 88.7% | 78.3% |
| 3211024 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.70 | 48.0 | 3.99e-01 | 87.1% | 41.9% |
| 3731347 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 57.0 | 3.78e-01 | 91.9% | 81.2% |
| 3506561 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 46.0 | 4.37e-01 | 96.8% | 58.7% |
| 4961065 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.66 | 44.0 | 4.46e-01 | 93.5% | 70.0% |
| 5072764 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 38.0 | 4.16e-01 | 77.4% | 72.0% |
| 4308725 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.64 | 52.0 | 3.58e-01 | 88.7% | 37.7% |
| 4294488 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.64 | 51.0 | 3.29e-01 | 88.7% | 82.1% |
| 4444614 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 42.0 | 3.83e-01 | 91.9% | 52.5% |
| 5021368 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.64 | 47.0 | 3.01e-01 | 80.6% | 46.3% |
| 4012704 | 206.1.2.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase | 0.63 | 51.0 | 3.26e-01 | 88.7% | 84.3% |
| 4472716 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.63 | 45.0 | 3.57e-01 | 98.4% | 36.2% |
| 3835032 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.62 | 36.0 | 4.02e-01 | 82.3% | 75.6% |
| 5083421 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.62 | 49.0 | 4.46e-01 | 95.2% | 63.3% |
| 3329872 | 3409.1.1.3 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 | 0.62 | 50.0 | 3.56e-01 | 88.7% | 57.2% |
| 4929294 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.60 | 50.0 | 3.61e-01 | 91.9% | 75.6% |
| 3958612 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.60 | 46.0 | 3.23e-01 | 83.9% | 39.5% |
| 4311175 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.59 | 50.0 | 3.32e-01 | 96.8% | 41.5% |
| 3596829 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 39.0 | 3.22e-01 | 96.8% | 37.4% |
| 4004388 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.58 | 46.0 | 3.28e-01 | 93.5% | 26.5% |
| 5016546 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 40.0 | 3.81e-01 | 96.8% | 61.3% |
| 4029165 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.57 | 44.0 | 2.66e-01 | 82.3% | 84.3% |
| 3387599 | 279.1.1.1 ↗ | a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Ldh_1_C | 0.57 | 50.0 | 3.62e-01 | 95.2% | 84.4% |
| 3587666 | 330.1.1.11 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF1071 | 0.57 | 45.0 | 3.56e-01 | 90.3% | 40.0% |
| 3276150 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.57 | 49.0 | 3.67e-01 | 95.2% | 94.7% |
| 3514098 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.56 | 40.0 | 3.27e-01 | 75.8% | 73.0% |
| 3921128 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 41.0 | 2.95e-01 | 82.3% | 67.3% |
| 5034549 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.56 | 39.0 | 3.22e-01 | 93.5% | 37.6% |
| 3427427 | 243.3.1.47 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7074 | 0.56 | 39.0 | 3.54e-01 | 77.4% | 52.2% |
| 3715900 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.56 | 46.0 | 3.70e-01 | 91.9% | 48.0% |
| 3821839 | 192.8.1.59 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › ATG14 | 0.56 | 47.0 | 2.99e-01 | 91.9% | 25.8% |
| 3471264 | 375.10.1.3 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 | 0.55 | 41.0 | 3.75e-01 | 79.0% | 100.0% |
| 2055520 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.55 | 46.0 | 3.17e-01 | 98.4% | 77.1% |
| 4031481 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 37.0 | 3.09e-01 | 88.7% | 40.0% |
| 3643457 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.54 | 49.0 | 3.45e-01 | 98.4% | 79.5% |
| 3282804 | 218.1.1.4 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_like_N | 0.54 | 38.0 | 3.86e-01 | 100.0% | 76.7% |
| 3955909 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.54 | 43.0 | 2.93e-01 | 91.9% | 51.9% |
| 3943542 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.54 | 37.0 | 3.07e-01 | 85.5% | 36.0% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.54 | 48.0 | 4.25e-01 | 100.0% | 87.8% |
| 5004907 | 279.1.1.1 ↗ | a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Ldh_1_C | 0.54 | 48.0 | 3.48e-01 | 100.0% | 80.6% |
| 3593319 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 41.0 | 3.10e-01 | 90.3% | 68.6% |
| 3962088 | 218.1.1.4 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_like_N | 0.53 | 37.0 | 3.51e-01 | 93.5% | 58.2% |
| 5010547 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.53 | 36.0 | 3.53e-01 | 91.9% | 64.3% |
| 4993562 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 40.0 | 3.38e-01 | 91.9% | 48.6% |
| 4499267 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 37.0 | 2.92e-01 | 93.5% | 32.0% |
| 3900135 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.53 | 33.0 | 3.07e-01 | 88.7% | 45.9% |
| 3618372 | 2484.1.1.99 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 | 0.52 | 44.0 | 3.63e-01 | 96.8% | 52.5% |
| 3614175 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 39.0 | 3.16e-01 | 79.0% | 80.9% |
| 3626119 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.51 | 36.0 | 2.87e-01 | 95.2% | 31.6% |
| 3192121 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.51 | 41.0 | 2.86e-01 | 90.3% | 53.0% |
| 3451832 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 42.0 | 3.72e-01 | 90.3% | 84.4% |
| 4856776 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.51 | 38.0 | 3.17e-01 | 100.0% | 41.7% |
| 3620145 | 922.1.1.7 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS | 0.51 | 40.0 | 4.14e-01 | 95.2% | 93.3% |
| 3258377 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.51 | 38.0 | 3.38e-01 | 80.6% | 96.7% |
| 2092583 | 1169.1.1.0 ↗ | a+b complex topology › Procyclic specific surface antigen-2 › Procyclic specific surface antigen-2 › Procyclic specific surface antigen-2 | 0.50 | 41.0 | 2.82e-01 | 90.3% | 79.6% |