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S2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00365
Bact-VirS2_009_000_R2_scaffold_4_prodigal-single.1__X__X__00365
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-108
Domain cluster:
rep: IMGVR_UViG_3300025584_000284-3300025584-Ga0209774_100031726__D151-252
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6p4wB01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.69 | 61.0 | 5.38e-01 | 98.6% | 87.2% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.65 | 53.0 | 3.86e-01 | 91.9% | 44.3% |
| 5dh0A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.58 | 50.0 | 4.34e-01 | 98.6% | 84.6% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.57 | 49.0 | 3.83e-01 | 97.3% | 58.6% |
| 1jg1A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 43.0 | 3.18e-01 | 85.1% | 55.3% |
| 3ty2A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.56 | 48.0 | 3.40e-01 | 100.0% | 48.8% |
| 3cqyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 44.0 | 3.38e-01 | 90.5% | 81.0% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.54 | 43.0 | 3.19e-01 | 91.9% | 57.3% |
| 3kk7A01 | 3.30.420.400 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 40.0 | 3.65e-01 | 83.8% | 89.9% |
| 4m3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 43.0 | 3.53e-01 | 94.6% | 69.2% |
| 2d27A02 | 3.30.300.160 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain | 0.53 | 39.0 | 3.80e-01 | 81.1% | 69.4% |
| 3bl4A02 | 3.40.970.30 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains | 0.53 | 34.0 | 3.91e-01 | 91.9% | 100.0% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 35.0 | 2.53e-01 | 71.6% | 90.4% |
| 1hezE00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 35.0 | 3.72e-01 | 74.3% | 86.9% |
| 1zatA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.51 | 40.0 | 3.55e-01 | 98.6% | 56.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5073529 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.78 | 70.0 | 6.26e-01 | 100.0% | 76.2% |
| 4959556 | 2008.1.1.219 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 | 0.74 | 68.0 | 5.80e-01 | 100.0% | 84.3% |
| 3258001 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 66.0 | 5.35e-01 | 100.0% | 81.4% |
| 3235677 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 59.0 | 5.04e-01 | 89.2% | 78.3% |
| 4173078 | 2008.1.1.94 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 | 0.72 | 63.0 | 5.19e-01 | 100.0% | 90.0% |
| 3565275 | 2008.1.1.94 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 | 0.72 | 63.0 | 4.63e-01 | 100.0% | 61.5% |
| 3281852 | 2008.1.1.14 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr | 0.71 | 64.0 | 5.12e-01 | 100.0% | 67.6% |
| 5022187 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 62.0 | 4.96e-01 | 100.0% | 71.0% |
| 5010218 | 2008.1.1.219 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 | 0.71 | 62.0 | 5.34e-01 | 100.0% | 81.7% |
| 3615637 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 62.0 | 4.50e-01 | 100.0% | 62.4% |
| 4032115 | 2008.1.1.102 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1829 | 0.70 | 61.0 | 5.24e-01 | 98.6% | 88.3% |
| 3958985 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.69 | 62.0 | 5.60e-01 | 100.0% | 85.0% |
| 3520776 | 2008.1.1.94 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 | 0.68 | 59.0 | 5.15e-01 | 100.0% | 86.4% |
| 3948428 | 2008.1.1.122 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII-MboI | 0.68 | 56.0 | 4.48e-01 | 91.9% | 68.0% |
| 4940296 | 2008.1.1.121 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MTES_1575 | 0.67 | 59.0 | 5.49e-01 | 100.0% | 84.2% |
| 3964655 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.67 | 59.0 | 5.20e-01 | 100.0% | 71.8% |
| 3196217 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 58.0 | 3.97e-01 | 100.0% | 52.3% |
| 4929290 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 56.0 | 4.75e-01 | 95.9% | 82.4% |
| 4010258 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.65 | 54.0 | 3.74e-01 | 94.6% | 36.6% |
| 4946865 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 56.0 | 4.92e-01 | 97.3% | 88.2% |
| 4928711 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 55.0 | 4.92e-01 | 100.0% | 91.8% |
| 4955318 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.64 | 55.0 | 4.66e-01 | 100.0% | 82.0% |
| 3839413 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.64 | 54.0 | 4.48e-01 | 100.0% | 79.3% |
| 5081837 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 55.0 | 5.00e-01 | 100.0% | 76.7% |
| 4028756 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.62 | 55.0 | 4.30e-01 | 100.0% | 53.8% |
| 3594690 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 56.0 | 3.99e-01 | 100.0% | 51.6% |
| 3969697 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 51.0 | 4.13e-01 | 95.9% | 61.3% |
| 4968712 | 2008.1.1.87 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C | 0.61 | 47.0 | 3.79e-01 | 87.8% | 60.0% |
| 5018195 | 2008.1.1.87 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C | 0.61 | 52.0 | 4.26e-01 | 98.6% | 71.7% |
| 4010728 | 2008.1.1.87 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C | 0.60 | 49.0 | 4.09e-01 | 91.9% | 72.6% |
| 4950447 | 2008.1.1.87 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C | 0.60 | 51.0 | 4.16e-01 | 100.0% | 67.5% |
| 5021928 | 2008.1.1.87 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C | 0.60 | 48.0 | 3.85e-01 | 91.9% | 61.3% |
| 3102571 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 50.0 | 4.18e-01 | 100.0% | 86.0% |
| 4215086 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 49.0 | 4.13e-01 | 94.6% | 83.8% |
| 5053235 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 48.0 | 3.43e-01 | 94.6% | 37.1% |
| 1348880 | 2008.1.1.74 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PvuRts1I-like_N | 0.57 | 50.0 | 4.13e-01 | 100.0% | 62.8% |
| 4368029 | 327.8.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GSPII protein E N-terminal domain-like › GSPII protein E N-terminal domain-like › MshEN | 0.56 | 41.0 | 4.06e-01 | 79.7% | 73.8% |
| 3732990 | 232.1.1.4 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph | 0.56 | 45.0 | 3.04e-01 | 95.9% | 53.0% |
| 7266 | 232.1.1.4 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph | 0.55 | 47.0 | 3.12e-01 | 98.6% | 89.7% |
| 997880 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.54 | 45.0 | 3.86e-01 | 98.6% | 55.0% |
| 4247071 | 186.1.1.2 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Flp_N | 0.54 | 40.0 | 3.59e-01 | 82.4% | 69.6% |
| 4019645 | 109.2.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_92, Glyco_hydro_92N | 0.54 | 43.0 | 2.53e-01 | 91.9% | 54.1% |
| 4862897 | 7512.1.1.15 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf | 0.51 | 40.0 | 3.14e-01 | 86.5% | 92.9% |
| 3722296 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.50 | 39.0 | 2.81e-01 | 87.8% | 52.3% |