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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00002
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00002
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-51_224-298
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10343.15 best | Q_salvage | 57.6 | 2.20e-15 | 97.3% | 32.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p9dE01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.57 | 45.0 | 3.47e-01 | 85.6% | 67.9% |
| 5x9vA01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.55 | 43.0 | 3.40e-01 | 84.7% | 71.0% |
| 1qi9A00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.54 | 48.0 | 3.10e-01 | 100.0% | 58.9% |
| 3fcyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 47.0 | 3.45e-01 | 98.2% | 86.4% |
| 1dgjA04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.53 | 46.0 | 4.06e-01 | 92.8% | 77.8% |
| 2w3sB02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.53 | 45.0 | 4.02e-01 | 93.7% | 78.9% |
| 2xgjA03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.52 | 40.0 | 3.28e-01 | 82.9% | 67.9% |
| 4gm2A00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 42.0 | 3.54e-01 | 85.6% | 57.9% |
| 8a0rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 36.0 | 3.50e-01 | 90.1% | 63.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5062638 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.94 | 86.0 | 6.01e-01 | 95.5% | 100.0% |
| 5061207 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.94 | 86.0 | 6.04e-01 | 95.5% | 99.3% |
| 3424753 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.93 | 90.0 | 6.23e-01 | 100.0% | 96.1% |
| 4632903 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.93 | 88.0 | 6.04e-01 | 99.1% | 98.8% |
| 3896239 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.93 | 87.0 | 6.02e-01 | 98.2% | 99.1% |
| 4995769 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.93 | 88.0 | 6.18e-01 | 99.1% | 96.3% |
| 5078036 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.92 | 86.0 | 5.99e-01 | 97.3% | 100.0% |
| 3740887 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.92 | 88.0 | 6.00e-01 | 100.0% | 95.8% |
| 3270979 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.91 | 87.0 | 5.92e-01 | 100.0% | 99.7% |
| 3937588 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.90 | 85.0 | 5.84e-01 | 99.1% | 98.2% |
| 3515866 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.90 | 73.0 | 5.26e-01 | 83.8% | 98.9% |
| 4978369 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.89 | 71.0 | 4.93e-01 | 83.8% | 86.1% |
| 4990588 | 102.1.2.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › AGOG | 0.84 | 70.0 | 5.02e-01 | 87.4% | 93.7% |
| 3615466 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.82 | 78.0 | 5.17e-01 | 100.0% | 99.5% |
| 3592620 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.65 | 63.0 | 4.62e-01 | 100.0% | 62.5% |
| 5079700 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.60 | 46.0 | 3.94e-01 | 82.0% | 94.1% |
| 3260912 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.56 | 42.0 | 3.25e-01 | 80.2% | 71.3% |
| 4221715 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.55 | 43.0 | 3.45e-01 | 85.6% | 72.1% |
| 4013519 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.55 | 43.0 | 3.31e-01 | 85.6% | 71.1% |
| 3390824 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.53 | 43.0 | 3.11e-01 | 89.2% | 73.5% |
| None | — | 0.52 | 44.0 | 3.56e-01 | 90.1% | 52.7% | |
| 5060658 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.52 | 43.0 | 3.34e-01 | 90.1% | 45.4% |
| 3164037 | 3405.1.1.6 ↗ | alpha duplicates or obligate multimers › FkpA dimerization domain-like › FkpA dimerization domain-like › FkpA dimerization domain-like › PF29764 | 0.51 | 40.0 | 3.82e-01 | 85.6% | 83.7% |
| 4145413 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.51 | 43.0 | 3.48e-01 | 91.9% | 50.7% |
| 3669058 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.50 | 40.0 | 2.93e-01 | 86.5% | 80.9% |
| 4652353 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.50 | 42.0 | 3.45e-01 | 90.1% | 51.7% |
| 4427284 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.50 | 42.0 | 3.60e-01 | 90.1% | 58.3% |
| 4994382 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.50 | 42.0 | 3.27e-01 | 91.0% | 42.4% |
| 3639704 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.50 | 43.0 | 3.38e-01 | 92.8% | 46.5% |
| 2575334 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.50 | 36.0 | 3.58e-01 | 74.8% | 82.8% |
D2
high
residues 63-221
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ornA01 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.78 | 52.0 | 6.05e-01 | 97.5% | 94.6% |
| 1keaA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.75 | 50.0 | 5.78e-01 | 97.5% | 93.8% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.75 | 38.0 | 5.24e-01 | 96.9% | 97.5% |
| 1ngnA00 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.73 | 48.0 | 5.05e-01 | 100.0% | 72.9% |
| 3i4uA01 | 1.20.120.1080 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.71 | 31.0 | 3.97e-01 | 100.0% | 67.0% |
| 1pu6A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.68 | 49.0 | 5.45e-01 | 97.5% | 95.1% |
| 4ai4A00 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.65 | 60.0 | 5.64e-01 | 98.1% | 87.1% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.57 | 39.0 | 4.38e-01 | 93.1% | 93.3% |
| 2n3eA01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.56 | 35.0 | 4.01e-01 | 100.0% | 85.2% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.53 | 36.0 | 4.17e-01 | 89.3% | 98.2% |
| 3mesA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 37.0 | 3.10e-01 | 73.0% | 91.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4936225 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.70 | 63.0 | 5.11e-01 | 100.0% | 52.4% |
| 4290764 | 102.1.2.12 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S | 0.60 | 52.0 | 4.47e-01 | 98.1% | 60.8% |
| 3988104 | 102.1.2.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD | 0.60 | 52.0 | 4.77e-01 | 98.1% | 71.7% |
| 3387611 | 102.1.2.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S | 0.59 | 52.0 | 4.72e-01 | 98.1% | 71.2% |
| 4179240 | 102.1.2.12 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S | 0.59 | 52.0 | 4.66e-01 | 98.1% | 68.8% |
| 4928995 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.59 | 52.0 | 4.63e-01 | 99.4% | 67.7% |
| 4963640 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.58 | 51.0 | 4.54e-01 | 98.1% | 65.8% |
| 5045783 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.58 | 51.0 | 4.59e-01 | 98.7% | 68.8% |
| 3603606 | 102.1.2.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD | 0.58 | 51.0 | 4.55e-01 | 99.4% | 67.7% |
| 3993189 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.54 | 43.0 | 2.95e-01 | 86.2% | 38.3% |
| 4210419 | 613.1.1.1 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c | 0.51 | 42.0 | 3.93e-01 | 95.0% | 70.0% |