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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00014
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00014
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-145
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00095__D19-115
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zh5A00 | 2.40.128.710 | Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E | 0.79 | 61.0 | 6.20e-01 | 79.4% | 85.6% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 40.0 | 3.89e-01 | 70.6% | 57.4% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.57 | 43.0 | 4.17e-01 | 77.9% | 98.0% |
| 4xmeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 47.0 | 4.29e-01 | 94.9% | 81.0% |
| 1fw3A00 | 2.40.230.10 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 | 0.53 | 39.0 | 3.18e-01 | 75.0% | 72.8% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.53 | 41.0 | 3.34e-01 | 82.4% | 84.4% |
| 2obdA01 | 3.15.20.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 | 0.52 | 40.0 | 3.14e-01 | 80.1% | 54.8% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.38e-01 | 71.3% | 95.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964215 | 897.2.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E | 0.87 | 68.0 | 7.36e-01 | 80.1% | 98.3% |
| 4299005 | 5084.1.1.21 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TSA | 0.55 | 43.0 | 3.84e-01 | 83.1% | 82.6% |
| 3581448 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 39.0 | 4.22e-01 | 87.5% | 87.8% |
| 3164124 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.54 | 38.0 | 4.06e-01 | 74.3% | 94.2% |
| 4014785 | 9.14.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 | 0.51 | 41.0 | 4.03e-01 | 85.3% | 99.3% |
| 4219493 | 3080.1.1.1 ↗ | a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › NPP1 | 0.51 | 42.0 | 3.64e-01 | 90.4% | 87.1% |
| 153416 | 5.1.2.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF5005 | 0.50 | 45.0 | 3.24e-01 | 100.0% | 85.2% |