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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00019
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00019
Identity
- Kingdom:
- phage
Quality
57.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 87-153
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.74 | 62.0 | 5.02e-01 | 92.5% | 60.6% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 55.0 | 4.38e-01 | 85.1% | 65.2% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.69 | 47.0 | 3.66e-01 | 70.1% | 74.6% |
| 3d9rB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 52.0 | 4.13e-01 | 85.1% | 78.2% |
| 3g16B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 52.0 | 3.94e-01 | 85.1% | 65.1% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 51.0 | 4.25e-01 | 85.1% | 87.2% |
| 4mjdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 50.0 | 4.26e-01 | 85.1% | 81.4% |
| 5tgnA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 51.0 | 4.36e-01 | 86.6% | 83.5% |
| 3f40A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 52.0 | 4.42e-01 | 89.6% | 60.4% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.62 | 47.0 | 4.19e-01 | 83.6% | 70.7% |
| 1zkrB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.60 | 44.0 | 3.56e-01 | 82.1% | 54.5% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.60 | 45.0 | 4.12e-01 | 82.1% | 62.9% |
| 3frhA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 43.0 | 3.20e-01 | 83.6% | 55.2% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.56 | 43.0 | 3.49e-01 | 86.6% | 85.2% |
| 2zgdA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.54 | 45.0 | 3.94e-01 | 89.6% | 73.2% |
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 39.0 | 3.30e-01 | 79.1% | 54.8% |
| 1konA01 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.54 | 39.0 | 3.97e-01 | 79.1% | 85.3% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.52 | 41.0 | 3.42e-01 | 83.6% | 67.0% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 35.0 | 3.32e-01 | 71.6% | 70.1% |
| 3i83A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 39.0 | 3.31e-01 | 86.6% | 51.1% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 40.0 | 3.07e-01 | 83.6% | 92.3% |
| 2qeuB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.52 | 40.0 | 3.20e-01 | 83.6% | 77.4% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 37.0 | 2.45e-01 | 80.6% | 32.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040686 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.70 | 54.0 | 3.32e-01 | 82.1% | 25.0% |
| 3223253 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.69 | 55.0 | 4.41e-01 | 85.1% | 46.4% |
| 5034776 | 138.1.1.4 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › MgsA_C | 0.66 | 52.0 | 3.82e-01 | 88.1% | 58.4% |
| 3338622 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.65 | 52.0 | 3.97e-01 | 88.1% | 63.1% |
| 2895133 | 173.1.1.0 ↗ | alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like | 0.65 | 49.0 | 4.59e-01 | 82.1% | 82.1% |
| 4930531 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.65 | 51.0 | 4.41e-01 | 85.1% | 88.6% |
| 4472109 | 243.1.1.103 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF30257 | 0.64 | 50.0 | 4.17e-01 | 86.6% | 87.5% |
| 150412 | 150.3.1.25 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL34 | 0.59 | 40.0 | 3.04e-01 | 70.1% | 70.2% |
| 3999246 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.59 | 41.0 | 3.62e-01 | 74.6% | 81.9% |
| 3843832 | 173.1.1.1 ↗ | alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like › Uteroglobin | 0.59 | 41.0 | 4.09e-01 | 76.1% | 82.2% |
| 4073885 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.58 | 43.0 | 2.79e-01 | 79.1% | 30.2% |
| 3255208 | 109.46.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH | 0.57 | 44.0 | 3.07e-01 | 85.1% | 59.1% |
| 3681752 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.56 | 42.0 | 2.94e-01 | 83.6% | 30.8% |
| 3824389 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.55 | 43.0 | 2.97e-01 | 86.6% | 36.7% |
| 3843429 | 109.3.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 | 0.51 | 43.0 | 3.74e-01 | 95.5% | 81.0% |
| 3342510 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.50 | 42.0 | 2.96e-01 | 98.5% | 60.0% |
D2
medium
residues 154-201