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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00072
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00072
Identity
- Kingdom:
- phage
Quality
71.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-60_72-98_155-187
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.68 | 50.0 | 3.60e-01 | 80.8% | 29.9% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.66 | 39.0 | 3.67e-01 | 77.5% | 48.6% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.66 | 45.0 | 4.36e-01 | 76.7% | 63.4% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.63 | 42.0 | 4.13e-01 | 76.7% | 63.6% |
| 4bj8K00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.62 | 41.0 | 4.14e-01 | 88.3% | 65.8% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 36.0 | 3.55e-01 | 72.5% | 52.8% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 43.0 | 4.15e-01 | 72.5% | 96.3% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.60 | 51.0 | 4.34e-01 | 90.8% | 58.5% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.60 | 48.0 | 4.43e-01 | 92.5% | 67.1% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 3.69e-01 | 94.2% | 78.7% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.58 | 48.0 | 4.05e-01 | 90.8% | 53.6% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.58 | 39.0 | 4.02e-01 | 91.7% | 71.2% |
| 2qiyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 33.0 | 3.21e-01 | 70.8% | 49.3% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.57 | 47.0 | 3.27e-01 | 90.0% | 93.4% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 36.0 | 3.42e-01 | 80.8% | 54.0% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.57 | 38.0 | 3.48e-01 | 91.7% | 51.6% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 47.0 | 4.37e-01 | 90.0% | 83.1% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.56 | 35.0 | 4.13e-01 | 71.7% | 96.1% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 33.0 | 3.11e-01 | 72.5% | 47.9% |
| 3g7gH00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 43.0 | 3.96e-01 | 92.5% | 65.8% |
| 1qhlA00 | 3.40.1140.10 | Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › | 0.54 | 49.0 | 4.10e-01 | 98.3% | 99.5% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 31.0 | 3.02e-01 | 71.7% | 47.1% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 34.0 | 3.29e-01 | 95.0% | 53.5% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.53 | 38.0 | 3.16e-01 | 74.2% | 53.7% |
| 4puxA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 42.0 | 3.88e-01 | 99.2% | 65.6% |
| 5azpA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.53 | 34.0 | 4.02e-01 | 70.8% | 96.3% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 31.0 | 3.17e-01 | 77.5% | 56.1% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 35.0 | 3.29e-01 | 85.0% | 54.7% |
| 2bmoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 36.0 | 3.16e-01 | 88.3% | 44.3% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.50 | 43.0 | 3.81e-01 | 91.7% | 80.8% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.50 | 38.0 | 3.84e-01 | 79.2% | 84.7% |
| 3byqA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.50 | 41.0 | 3.54e-01 | 89.2% | 55.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3391818 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.71 | 46.0 | 5.01e-01 | 82.5% | 78.8% |
| 3217156 | 243.1.1.46 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 | 0.70 | 43.0 | 4.03e-01 | 71.7% | 52.9% |
| 4069053 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.68 | 48.0 | 3.46e-01 | 80.8% | 26.9% |
| 3963443 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.65 | 50.0 | 4.95e-01 | 80.0% | 94.4% |
| 3326287 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.64 | 45.0 | 4.50e-01 | 70.8% | 71.7% |
| 3854926 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.62 | 53.0 | 3.65e-01 | 91.7% | 27.7% |
| 3525853 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.62 | 45.0 | 4.19e-01 | 82.5% | 60.7% |
| 4195943 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.60 | 46.0 | 3.38e-01 | 81.7% | 38.1% |
| 4064323 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.60 | 46.0 | 3.20e-01 | 82.5% | 26.8% |
| 4976732 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.58 | 47.0 | 3.40e-01 | 85.8% | 88.4% |
| 3811744 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.58 | 36.0 | 3.43e-01 | 81.7% | 51.4% |
| 3484227 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.57 | 49.0 | 4.32e-01 | 97.5% | 64.1% |
| 3968185 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.57 | 44.0 | 3.01e-01 | 81.7% | 58.0% |
| 3854441 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.57 | 47.0 | 3.93e-01 | 91.7% | 50.2% |
| 3977398 | 5084.1.1.16 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom | 0.57 | 48.0 | 4.35e-01 | 90.0% | 86.3% |
| 3980016 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.57 | 48.0 | 4.56e-01 | 90.8% | 89.3% |
| 3954741 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.56 | 32.0 | 3.14e-01 | 84.2% | 50.4% |
| None | — | 0.56 | 47.0 | 4.37e-01 | 90.0% | 83.1% | |
| 3255190 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 34.0 | 3.70e-01 | 72.5% | 72.3% |
| 3290198 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 45.0 | 4.11e-01 | 91.7% | 64.8% |
| 3843944 | 243.5.1.7 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AKAP28 | 0.55 | 39.0 | 3.86e-01 | 90.0% | 68.8% |
| 3236032 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.55 | 43.0 | 2.75e-01 | 82.5% | 25.0% |
| 3203519 | 243.1.1.44 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MBA1 | 0.55 | 36.0 | 3.01e-01 | 71.7% | 39.0% |
| 3285746 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.55 | 35.0 | 3.20e-01 | 90.0% | 49.0% |
| 3870002 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.53 | 44.0 | 3.05e-01 | 91.7% | 26.2% |
| 3933957 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.53 | 46.0 | 4.20e-01 | 94.2% | 76.9% |
| 3173251 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.52 | 48.0 | 4.23e-01 | 99.2% | 74.7% |
| 4172098 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.52 | 42.0 | 3.64e-01 | 90.8% | 83.5% |
| 4222629 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.52 | 42.0 | 3.89e-01 | 88.3% | 81.9% |
| 3571697 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.51 | 42.0 | 3.67e-01 | 92.5% | 57.4% |
| 3164124 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.50 | 37.0 | 3.75e-01 | 81.7% | 77.5% |
D2
medium
residues 99-154