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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00088

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00088

Identity

Kingdom:
phage

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-204
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.65 38.0 4.50e-01 100.0% 84.5%
2wmpB00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.64 48.0 5.24e-01 100.0% 96.7%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 35.0 4.18e-01 100.0% 82.7%
8ehtB01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.63 55.0 5.67e-01 100.0% 98.6%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 40.0 4.60e-01 99.4% 89.2%
3vi3A02 2.60.40.1460 Mainly Beta › Sandwich › Immunoglobulin-like › Integrin domains. Chain A, domain 2 0.62 46.0 4.66e-01 100.0% 77.0%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 37.0 4.42e-01 100.0% 90.1%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 39.0 4.45e-01 99.4% 86.0%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 29.0 3.99e-01 99.4% 100.0%
4w6yA00 2.60.120.1210 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 4.71e-01 98.7% 84.2%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 41.0 4.51e-01 100.0% 90.2%
3ideA02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.58 48.0 4.93e-01 100.0% 95.1%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.58 36.0 4.04e-01 88.3% 81.0%
4indA02 2.60.120.1310 Mainly Beta › Sandwich › Jelly Rolls › 0.58 39.0 4.48e-01 100.0% 94.6%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 4.66e-01 100.0% 90.6%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 4.59e-01 100.0% 93.7%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 4.17e-01 100.0% 89.1%
3aabB00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 26.0 3.10e-01 97.4% 60.4%
3demA03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.56 39.0 4.41e-01 97.4% 96.5%
4nehA03 2.60.40.1460 Mainly Beta › Sandwich › Immunoglobulin-like › Integrin domains. Chain A, domain 2 0.56 42.0 4.25e-01 100.0% 78.1%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.56 35.0 3.79e-01 100.0% 72.2%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 4.46e-01 100.0% 95.1%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 4.80e-01 100.0% 99.3%
4lr4A02 2.60.120.1430 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.94e-01 100.0% 91.7%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 35.0 3.85e-01 95.5% 78.7%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 35.0 4.15e-01 100.0% 99.0%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 4.65e-01 100.0% 95.8%
1jv2A04 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.54 49.0 4.62e-01 100.0% 81.9%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 35.0 4.11e-01 98.7% 98.0%
1tg7A04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 4.40e-01 100.0% 81.8%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.54 47.0 3.84e-01 96.8% 74.7%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 41.0 4.36e-01 100.0% 91.2%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 4.07e-01 96.8% 73.3%
4ht1T00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 4.52e-01 100.0% 99.2%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.46e-01 81.8% 72.4%
8a28A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 4.70e-01 100.0% 100.0%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.74e-01 100.0% 96.3%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 46.0 3.83e-01 96.8% 74.8%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.53 43.0 4.27e-01 100.0% 82.7%
4d7yA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 4.35e-01 100.0% 97.7%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 4.10e-01 94.8% 83.3%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 4.56e-01 100.0% 100.0%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 4.58e-01 99.4% 97.3%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 4.31e-01 100.0% 96.9%
7nitA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 4.49e-01 100.0% 95.9%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 4.59e-01 100.0% 97.4%
1nkgA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 47.0 4.53e-01 100.0% 96.5%
1mkfA01 2.60.40.1330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.15e-01 96.8% 87.4%
3bk3C00 6.20.200.20 Special › Other non-globular › Defensin A-like › 0.51 21.0 2.84e-01 96.8% 74.6%
3abzA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 4.52e-01 100.0% 99.4%
3k4zA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 4.54e-01 100.0% 98.8%
4uapA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 4.43e-01 100.0% 96.7%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 4.38e-01 98.7% 100.0%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.50 46.0 4.35e-01 100.0% 97.2%
2y38A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 45.0 3.98e-01 100.0% 82.8%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 33.0 3.69e-01 90.9% 87.1%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602332 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.73 62.0 6.48e-01 98.7% 98.6%
5001041 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 45.0 5.20e-01 98.1% 95.5%
3478889 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 46.0 4.58e-01 91.6% 69.4%
3617942 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 47.0 4.87e-01 100.0% 81.4%
4014484 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 40.0 4.85e-01 99.4% 96.0%
4944599 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 48.0 5.07e-01 100.0% 88.9%
4335494 11.1.5.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Fimbrial 0.64 54.0 5.63e-01 100.0% 97.2%
3788037 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.64 44.0 5.07e-01 90.9% 99.1%
5014637 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 40.0 4.74e-01 100.0% 96.0%
2528926 10.32.1.43 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GxDLY 0.63 39.0 4.64e-01 86.4% 91.3%
4062548 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.63 44.0 4.30e-01 90.9% 66.1%
5039581 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 41.0 4.70e-01 77.9% 90.3%
3967252 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 53.0 5.31e-01 100.0% 89.9%
5083851 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 42.0 4.81e-01 100.0% 94.7%
5055086 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 38.0 4.54e-01 100.0% 98.9%
4945364 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.61 34.0 4.11e-01 85.7% 84.0%
3748555 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.60 42.0 4.77e-01 90.9% 96.5%
3360190 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 39.0 4.63e-01 89.6% 99.0%
5035807 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 51.0 5.13e-01 100.0% 91.0%
5083000 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 42.0 4.75e-01 100.0% 97.4%
5081702 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 43.0 4.74e-01 98.1% 95.0%
3521963 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 39.0 4.51e-01 100.0% 92.7%
3723511 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 44.0 4.78e-01 90.9% 96.0%
3933224 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 40.0 4.55e-01 97.4% 94.8%
4362184 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.58 45.0 4.79e-01 100.0% 96.2%
4415823 10.32.1.246 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PalB_C 0.58 44.0 4.64e-01 100.0% 91.1%
3178394 10.32.1.175 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Rax2_3 0.58 52.0 5.02e-01 100.0% 91.4%
3219782 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 42.0 4.41e-01 100.0% 85.2%
3480708 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.57 39.0 4.19e-01 100.0% 81.5%
3544174 11.1.5.95 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd 0.56 43.0 4.46e-01 96.8% 85.5%
3598703 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 42.0 4.30e-01 100.0% 82.8%
3886059 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.56 46.0 4.59e-01 92.2% 85.0%
4981531 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 40.0 4.29e-01 99.4% 87.4%
3533957 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.55 47.0 4.85e-01 100.0% 97.9%
4942750 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 40.0 4.40e-01 90.9% 93.6%
3398159 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 42.0 4.51e-01 97.4% 93.3%
3259823 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 47.0 4.45e-01 100.0% 77.4%
3483450 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 33.0 3.51e-01 100.0% 66.2%
3703659 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 44.0 4.54e-01 98.7% 92.4%
3700818 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 48.0 4.63e-01 100.0% 93.3%
3486154 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 42.0 4.36e-01 97.4% 91.4%
4027527 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.54 31.0 3.85e-01 77.9% 100.0%
5027267 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 46.0 4.70e-01 100.0% 96.7%
4941878 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 40.0 4.37e-01 100.0% 97.6%
4099249 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 48.0 4.80e-01 99.4% 98.1%
5016526 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 42.0 3.88e-01 85.1% 91.2%
3628503 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.53 44.0 4.47e-01 100.0% 90.3%
3780700 11.1.5.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.53 42.0 4.15e-01 94.8% 77.6%
2979144 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.53 46.0 4.59e-01 100.0% 92.4%
3511357 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 46.0 4.62e-01 100.0% 96.8%
3414663 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.52 40.0 4.35e-01 99.4% 98.4%
3947185 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.52 43.0 4.44e-01 100.0% 95.2%
3830724 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.52 36.0 2.29e-01 96.8% 12.7%
3918177 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.52 45.0 4.54e-01 100.0% 95.5%
3890782 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.52 44.0 4.53e-01 100.0% 99.3%
4217288 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.52 44.0 4.18e-01 91.6% 98.3%
4509186 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.51 46.0 4.52e-01 100.0% 95.9%
3880553 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 40.0 4.04e-01 94.8% 81.2%
1030892 11.26.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Viral chemokine binding protein m3 › Viral chemokine binding protein m3 › M3 0.51 45.0 4.16e-01 96.8% 87.9%
3205036 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 44.0 3.82e-01 100.0% 60.4%
4946313 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.97e-01 100.0% 90.8%
3932168 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.50 45.0 4.42e-01 100.0% 95.9%
3216987 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 45.0 4.42e-01 100.0% 96.5%