←Back to structures
S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00137
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00137
Identity
- Kingdom:
- phage
Quality
47.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-58
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.73 | 57.0 | 4.55e-01 | 84.0% | 50.0% |
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.72 | 50.0 | 4.85e-01 | 72.0% | 80.0% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.72 | 50.0 | 4.15e-01 | 74.0% | 40.7% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.72 | 51.0 | 4.28e-01 | 78.0% | 44.2% |
| 3u62A01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.72 | 46.0 | 3.39e-01 | 84.0% | 26.4% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.72 | 50.0 | 3.84e-01 | 76.0% | 35.0% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 53.0 | 4.79e-01 | 86.0% | 69.9% |
| 2xqoA00 | 1.10.530.60 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.69 | 57.0 | 3.80e-01 | 94.0% | 80.0% |
| 8a9nA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 47.0 | 3.53e-01 | 76.0% | 27.5% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 47.0 | 3.80e-01 | 76.0% | 36.6% |
| 1pwkA00 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.67 | 55.0 | 4.51e-01 | 92.0% | 82.4% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.66 | 52.0 | 3.19e-01 | 100.0% | 14.1% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 50.0 | 3.02e-01 | 100.0% | 11.2% |
| 3p5jB02 | 1.10.20.120 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.64 | 50.0 | 4.15e-01 | 90.0% | 46.9% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 47.0 | 4.17e-01 | 84.0% | 73.4% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.63 | 51.0 | 4.39e-01 | 98.0% | 54.7% |
| 3enpA00 | 3.30.2380.10 | Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB | 0.63 | 54.0 | 3.78e-01 | 98.0% | 62.0% |
| 3cnhB02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 41.0 | 3.77e-01 | 70.0% | 50.0% |
| 7ep3A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 46.0 | 2.90e-01 | 90.0% | 16.3% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.62 | 47.0 | 3.56e-01 | 88.0% | 74.6% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.62 | 41.0 | 4.18e-01 | 70.0% | 72.9% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 48.0 | 3.93e-01 | 94.0% | 64.1% |
| 2ibdA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 44.0 | 4.57e-01 | 82.0% | 86.7% |
| 4ixjA02 | 3.30.1690.20 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › | 0.60 | 47.0 | 3.48e-01 | 100.0% | 31.3% |
| 2gf2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 46.0 | 3.39e-01 | 84.0% | 31.3% |
| 5lb3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 51.0 | 3.34e-01 | 100.0% | 33.8% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.58 | 49.0 | 4.25e-01 | 98.0% | 63.0% |
| 3i1iB01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 48.0 | 2.93e-01 | 100.0% | 38.0% |
| 3mvpA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 44.0 | 4.53e-01 | 84.0% | 91.5% |
| 3k59A07 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.55 | 47.0 | 3.48e-01 | 100.0% | 72.5% |
| 1vfiA00 | 1.10.246.100 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 | 0.55 | 42.0 | 3.48e-01 | 98.0% | 45.3% |
| 2ko6A00 | 1.10.1580.20 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › Protein of unknown function DUF1040 | 0.55 | 44.0 | 3.70e-01 | 94.0% | 50.6% |
| 2fd5A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 41.0 | 4.18e-01 | 90.0% | 87.5% |
| 4l7nA01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.54 | 43.0 | 3.29e-01 | 100.0% | 53.1% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 45.0 | 3.56e-01 | 100.0% | 46.8% |
| 4gpkF02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 47.0 | 3.04e-01 | 100.0% | 75.4% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.52 | 39.0 | 3.78e-01 | 90.0% | 77.4% |
| 3e1sA01 | 1.10.10.2220 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 38.0 | 3.31e-01 | 90.0% | 48.4% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3799750 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.70 | 53.0 | 3.53e-01 | 92.0% | 21.0% |
| 3351474 | 7010.1.1.0 ↗ | alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator | 0.70 | 49.0 | 4.57e-01 | 76.0% | 58.5% |
| 5077698 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.68 | 51.0 | 3.29e-01 | 84.0% | 17.6% |
| 3740779 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.68 | 45.0 | 3.94e-01 | 90.0% | 46.7% |
| 5036214 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 50.0 | 4.73e-01 | 90.0% | 66.7% |
| 3703706 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.68 | 52.0 | 3.48e-01 | 100.0% | 21.0% |
| 3330542 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.67 | 45.0 | 3.25e-01 | 86.0% | 25.9% |
| 4380798 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.67 | 53.0 | 3.20e-01 | 100.0% | 13.2% |
| 4505114 | 6130.1.1.0 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain | 0.67 | 51.0 | 4.66e-01 | 96.0% | 63.1% |
| 3352389 | 101.1.10.58 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF30926 | 0.67 | 48.0 | 4.69e-01 | 92.0% | 69.1% |
| 4945144 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 47.0 | 4.23e-01 | 90.0% | 52.0% |
| 3577701 | 4230.1.1.7 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › Y_phosphatase | 0.67 | 49.0 | 4.27e-01 | 96.0% | 51.2% |
| 3356704 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.66 | 55.0 | 4.02e-01 | 100.0% | 80.6% |
| 3241348 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 45.0 | 3.49e-01 | 88.0% | 34.3% |
| 3742476 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 51.0 | 4.56e-01 | 88.0% | 58.9% |
| 4937791 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.65 | 46.0 | 3.50e-01 | 78.0% | 31.0% |
| 5030594 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.64 | 49.0 | 3.59e-01 | 98.0% | 30.7% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.58 | 44.0 | 3.47e-01 | 84.0% | 40.0% |
| 3823849 | 10.12.1.101 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 | 0.53 | 40.0 | 2.48e-01 | 92.0% | 12.7% |
| 3287820 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.50 | 43.0 | 3.51e-01 | 100.0% | 51.0% |
| 4369892 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.50 | 43.0 | 4.10e-01 | 100.0% | 83.3% |
D2
high
residues 708-828
D3
medium
residues 320-451
D4
medium
residues 452-606
D5
medium
residues 607-670