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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00157
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00157
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 222-358
Domain cluster:
rep: term4_saliva_scaffold_5_prodigal-single.1__X__X__00005__D550-685
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01043.27 best | SecA_PP_bind | 125.9 | 1.60e-36 | 89.8% | 97.3% |
D2
high
residues 410-624
Domain cluster:
rep: CP025712.1__AUO37541.1__YDC107_5424__00064__D413-546_602-643
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21090.4 best | P-loop_SecA | 254.7 | 8.50e-76 | 91.2% | 98.0% |
CATH (73)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m6nA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.95 | 74.0 | 8.32e-01 | 93.5% | 97.7% |
| 1oywA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.84 | 50.0 | 6.40e-01 | 78.6% | 97.0% |
| 7pliF02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.84 | 55.0 | 6.58e-01 | 98.6% | 94.7% |
| 2hyiC02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 56.0 | 6.32e-01 | 98.1% | 86.8% |
| 1hv8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 55.0 | 6.49e-01 | 99.5% | 94.7% |
| 1c4oA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.81 | 53.0 | 5.92e-01 | 99.1% | 81.1% |
| 6b4kB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.80 | 54.0 | 6.04e-01 | 97.7% | 85.9% |
| 1wp9A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 53.0 | 6.36e-01 | 99.1% | 98.7% |
| 3rc3A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 49.0 | 5.93e-01 | 99.1% | 95.2% |
| 6x50A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 54.0 | 5.48e-01 | 96.7% | 72.9% |
| 3sxuA00 | 3.40.50.10110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DNA polymerase III subunit chi | 0.75 | 46.0 | 5.60e-01 | 98.6% | 90.4% |
| 2p6nA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 54.0 | 6.25e-01 | 97.7% | 98.1% |
| 1c4oA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 43.0 | 5.03e-01 | 96.7% | 78.4% |
| 2xgjB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 49.0 | 5.07e-01 | 97.7% | 68.9% |
| 2yjtD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 56.0 | 6.33e-01 | 96.3% | 98.2% |
| 4w7sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 56.0 | 6.08e-01 | 97.7% | 90.9% |
| 2p6rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 51.0 | 5.40e-01 | 96.3% | 78.4% |
| 1gm5A05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 53.0 | 6.06e-01 | 100.0% | 100.0% |
| 7r7jA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 51.0 | 5.49e-01 | 97.7% | 83.3% |
| 8kcaB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 55.0 | 6.12e-01 | 99.5% | 98.2% |
| 4ljyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.71 | 58.0 | 6.16e-01 | 99.5% | 94.8% |
| 2v1xA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.71 | 52.0 | 5.22e-01 | 97.7% | 73.6% |
| 3dmnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 47.0 | 5.45e-01 | 97.2% | 90.7% |
| 6yhrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 49.0 | 5.19e-01 | 99.1% | 78.9% |
| 6vsxA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 47.0 | 5.50e-01 | 97.2% | 93.1% |
| 7a8rA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 55.0 | 5.75e-01 | 99.1% | 88.4% |
| 3i5xA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 53.0 | 5.07e-01 | 99.1% | 70.0% |
| 6yhrA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 55.0 | 5.65e-01 | 99.1% | 87.1% |
| 3hjhA03 | 3.40.50.11140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 31.0 | 4.59e-01 | 78.6% | 97.9% |
| 3mwyW04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 62.0 | 5.66e-01 | 97.2% | 98.5% |
| 2ocaA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 56.0 | 5.70e-01 | 98.1% | 91.3% |
| 8ebtA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 48.0 | 5.29e-01 | 90.7% | 91.6% |
| 2vl7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 46.0 | 5.10e-01 | 90.7% | 90.1% |
| 1yksA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 50.0 | 5.49e-01 | 100.0% | 95.0% |
| 6fwrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 54.0 | 5.62e-01 | 98.6% | 93.0% |
| 2mr5A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 40.0 | 4.99e-01 | 81.9% | 100.0% |
| 1amuA01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 32.0 | 3.66e-01 | 87.4% | 63.0% |
| 3i5xA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 57.0 | 5.32e-01 | 100.0% | 78.8% |
| 8jx6B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 47.0 | 4.92e-01 | 91.2% | 84.5% |
| 3jcmN01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 55.0 | 5.32e-01 | 98.6% | 85.8% |
| 6i1dA02 | 3.40.50.10890 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 45.0 | 4.82e-01 | 74.9% | 100.0% |
| 4bgdA08 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 54.0 | 5.57e-01 | 99.1% | 97.5% |
| 5lb3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 51.0 | 5.06e-01 | 98.1% | 83.8% |
| 7nadx02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 55.0 | 5.35e-01 | 100.0% | 86.9% |
| 1gpjA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 42.0 | 4.88e-01 | 87.9% | 99.4% |
| 3vkgA10 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 44.0 | 4.60e-01 | 74.9% | 90.8% |
| 1j5xA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.60 | 34.0 | 4.03e-01 | 79.1% | 78.0% |
| 2l69A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 29.0 | 3.56e-01 | 97.2% | 70.9% |
| 3o8oB04 | 3.40.50.460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain | 0.59 | 36.0 | 4.15e-01 | 75.8% | 83.6% |
| 3hl0A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 41.0 | 4.66e-01 | 82.8% | 95.0% |
| 2cb0A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.58 | 34.0 | 3.99e-01 | 80.0% | 80.9% |
| 3g68A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.57 | 34.0 | 3.97e-01 | 78.6% | 82.8% |
| 1pjrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 44.0 | 4.62e-01 | 97.2% | 84.7% |
| 4n03A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 40.0 | 4.41e-01 | 93.5% | 87.5% |
| 4wzzA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 41.0 | 4.64e-01 | 94.9% | 99.4% |
| 3vkgA05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 38.0 | 4.49e-01 | 74.4% | 100.0% |
| 2gk6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 50.0 | 4.59e-01 | 96.7% | 75.5% |
| 7en7A01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.55 | 38.0 | 4.03e-01 | 88.4% | 78.5% |
| 5bq3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 39.0 | 4.47e-01 | 95.8% | 100.0% |
| 3d02A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 38.0 | 4.41e-01 | 93.5% | 99.3% |
| 1svmA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 38.0 | 4.42e-01 | 76.3% | 100.0% |
| 4p1zA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 29.0 | 3.64e-01 | 81.4% | 84.3% |
| 2e4uA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 41.0 | 4.53e-01 | 90.2% | 96.5% |
| 3i0zA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.55 | 35.0 | 3.76e-01 | 80.0% | 75.6% |
| 4ivnA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.54 | 38.0 | 4.04e-01 | 88.4% | 79.8% |
| 2a3nA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.54 | 35.0 | 3.93e-01 | 89.3% | 84.0% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 35.0 | 3.97e-01 | 93.5% | 87.0% |
| 4c7oA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 4.33e-01 | 95.8% | 90.2% |
| 3hwwA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.52 | 43.0 | 4.44e-01 | 88.8% | 91.2% |
| 2qenA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 39.0 | 4.03e-01 | 76.7% | 93.1% |
| 1zu4A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 4.24e-01 | 95.8% | 84.4% |
| 7xc2A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 36.0 | 4.05e-01 | 77.2% | 91.8% |
| 4lpsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 37.0 | 3.73e-01 | 85.6% | 74.4% |
ECOD (98)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.99 | 84.0 | 5.56e-01 | 100.0% | 26.8% | |
| None | — | 0.99 | 84.0 | 5.63e-01 | 100.0% | 28.5% | |
| None | — | 0.99 | 84.0 | 5.53e-01 | 100.0% | 26.6% | |
| 4425288 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.98 | 83.0 | 5.44e-01 | 100.0% | 25.3% |
| None | — | 0.98 | 90.0 | 6.00e-01 | 100.0% | 30.3% | |
| None | — | 0.98 | 91.0 | 5.94e-01 | 100.0% | 27.4% | |
| None | — | 0.98 | 95.0 | 6.28e-01 | 100.0% | 30.4% | |
| 4064274 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.98 | 83.0 | 5.48e-01 | 100.0% | 26.8% |
| 4578106 | 161.1.1.0 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.97 | 83.0 | 6.34e-01 | 100.0% | 44.6% |
| 4665973 | 161.1.1.0 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.97 | 82.0 | 5.50e-01 | 100.0% | 27.4% |
| None | — | 0.97 | 95.0 | 6.37e-01 | 100.0% | 32.4% | |
| 4427116 | 2004.1.1.224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA | 0.97 | 95.0 | 9.15e-01 | 100.0% | 91.1% |
| None | — | 0.97 | 81.0 | 5.44e-01 | 100.0% | 28.2% | |
| 4037650 | 161.1.1.0 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.97 | 83.0 | 5.42e-01 | 100.0% | 25.6% |
| None | — | 0.96 | 94.0 | 6.14e-01 | 100.0% | 37.9% | |
| 3957282 | 2004.1.1.224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA | 0.96 | 77.0 | 7.73e-01 | 94.4% | 81.4% |
| None | — | 0.96 | 81.0 | 5.54e-01 | 100.0% | 29.8% | |
| None | — | 0.96 | 89.0 | 8.99e-01 | 95.3% | 98.1% | |
| None | — | 0.95 | 82.0 | 5.58e-01 | 100.0% | 30.1% | |
| None | — | 0.95 | 93.0 | 6.11e-01 | 100.0% | 30.7% | |
| 4477827 | 2004.1.1.472 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD, P-loop_SecA | 0.95 | 89.0 | 6.33e-01 | 95.8% | 50.0% |
| None | — | 0.95 | 93.0 | 6.10e-01 | 100.0% | 36.4% | |
| 4480620 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.95 | 93.0 | 6.00e-01 | 100.0% | 34.1% |
| None | — | 0.95 | 93.0 | 6.10e-01 | 100.0% | 35.0% | |
| 4208861 | 2004.1.1.224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA | 0.95 | 88.0 | 8.37e-01 | 95.3% | 98.0% |
| 4364689 | 2004.1.1.472 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD, P-loop_SecA | 0.95 | 87.0 | 6.08e-01 | 93.5% | 50.4% |
| 4098405 | 2004.1.1.224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA | 0.95 | 88.0 | 7.82e-01 | 94.4% | 97.5% |
| None | — | 0.95 | 92.0 | 5.96e-01 | 100.0% | 36.2% | |
| 3833753 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.95 | 92.0 | 5.99e-01 | 100.0% | 37.2% |
| 4329634 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 92.0 | 6.03e-01 | 100.0% | 38.9% |
| 4308619 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 92.0 | 5.95e-01 | 100.0% | 41.1% |
| 4309355 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 92.0 | 6.07e-01 | 100.0% | 34.3% |
| 4151178 | 2004.1.1.224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA | 0.94 | 87.0 | 8.02e-01 | 94.4% | 97.3% |
| 4100828 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 92.0 | 7.02e-01 | 100.0% | 53.9% |
| None | — | 0.94 | 81.0 | 5.47e-01 | 100.0% | 29.4% | |
| None | — | 0.94 | 92.0 | 6.05e-01 | 100.0% | 30.5% | |
| 4167667 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 92.0 | 5.96e-01 | 100.0% | 35.9% |
| None | — | 0.93 | 79.0 | 5.38e-01 | 100.0% | 29.4% | |
| 3676199 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.93 | 91.0 | 5.87e-01 | 100.0% | 36.0% |
| 4481873 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.93 | 83.0 | 5.64e-01 | 100.0% | 31.0% |
| 4193218 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.93 | 91.0 | 5.93e-01 | 100.0% | 29.5% |
| 957914 | 2004.1.1.224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA | 0.93 | 83.0 | 7.04e-01 | 91.6% | 96.9% |
| None | — | 0.92 | 90.0 | 6.04e-01 | 100.0% | 32.2% | |
| 4645731 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.92 | 90.0 | 5.91e-01 | 100.0% | 30.9% |
| 4047873 | 2004.1.1.472 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD, P-loop_SecA | 0.92 | 78.0 | 5.58e-01 | 100.0% | 35.2% |
| None | — | 0.92 | 79.0 | 5.33e-01 | 100.0% | 28.6% | |
| 3679227 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.92 | 84.0 | 6.06e-01 | 94.4% | 48.8% |
| 4260480 | 2004.1.1.224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA | 0.91 | 76.0 | 7.61e-01 | 100.0% | 83.2% |
| 4488310 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.90 | 87.0 | 5.79e-01 | 100.0% | 31.4% |
| 4627178 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.90 | 77.0 | 5.22e-01 | 100.0% | 28.4% |
| None | — | 0.89 | 81.0 | 8.11e-01 | 93.5% | 98.2% | |
| 4064125 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 81.0 | 5.47e-01 | 100.0% | 30.9% |
| 3711265 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.86 | 57.0 | 6.77e-01 | 99.1% | 93.5% |
| 3991765 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.85 | 55.0 | 5.98e-01 | 99.1% | 76.1% |
| 4176215 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.84 | 57.0 | 3.99e-01 | 98.6% | 24.9% |
| 3991605 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.84 | 50.0 | 6.37e-01 | 74.4% | 95.6% |
| 3824659 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.83 | 56.0 | 4.34e-01 | 99.1% | 34.2% |
| 3662187 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.82 | 55.0 | 5.41e-01 | 98.6% | 63.0% |
| None | — | 0.82 | 55.0 | 6.11e-01 | 99.1% | 83.4% | |
| 4454425 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.82 | 56.0 | 5.69e-01 | 97.7% | 69.8% |
| 3176162 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.81 | 56.0 | 5.34e-01 | 97.7% | 60.0% |
| 4033138 | 2004.1.1.32 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,UvrB | 0.81 | 54.0 | 5.02e-01 | 99.5% | 56.1% |
| 5033420 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.80 | 53.0 | 5.61e-01 | 99.5% | 73.3% |
| 4947683 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 53.0 | 5.86e-01 | 99.5% | 81.7% |
| 3395278 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.78 | 58.0 | 4.30e-01 | 100.0% | 32.9% |
| 3578408 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.78 | 58.0 | 6.30e-01 | 100.0% | 89.4% |
| 3790294 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.77 | 59.0 | 6.12e-01 | 99.5% | 83.5% |
| 4621613 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 52.0 | 4.84e-01 | 98.6% | 55.3% |
| 3273368 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.76 | 60.0 | 6.20e-01 | 98.1% | 86.5% |
| 3948518 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.74 | 57.0 | 5.92e-01 | 98.1% | 83.4% |
| None | — | 0.73 | 53.0 | 5.05e-01 | 99.1% | 63.2% | |
| 4383623 | 2004.1.1.32 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,UvrB | 0.72 | 56.0 | 5.81e-01 | 99.1% | 85.5% |
| 3609158 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.71 | 56.0 | 5.66e-01 | 99.5% | 81.4% |
| 3426410 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.70 | 55.0 | 5.85e-01 | 93.0% | 90.5% |
| 3991555 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.70 | 59.0 | 6.28e-01 | 99.5% | 97.9% |
| 3590162 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 32.0 | 4.80e-01 | 80.5% | 98.9% |
| 3244155 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 53.0 | 5.68e-01 | 98.6% | 90.8% |
| 3512323 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.68 | 59.0 | 5.93e-01 | 90.7% | 96.4% |
| 3935279 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.67 | 60.0 | 5.12e-01 | 93.5% | 73.8% |
| 4003840 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 56.0 | 5.73e-01 | 92.6% | 90.7% |
| 3831995 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 57.0 | 5.64e-01 | 100.0% | 85.3% |
| 3937677 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.66 | 55.0 | 3.95e-01 | 99.5% | 32.6% |
| None | — | 0.66 | 57.0 | 4.10e-01 | 91.6% | 91.1% | |
| None | — | 0.65 | 57.0 | 4.06e-01 | 91.6% | 89.5% | |
| 3354881 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.65 | 57.0 | 5.27e-01 | 91.2% | 93.3% |
| 4214695 | 506.2.1.0 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain | 0.65 | 57.0 | 3.96e-01 | 91.6% | 82.1% |
| 3483493 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 54.0 | 5.53e-01 | 96.3% | 90.0% |
| 5054853 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.64 | 53.0 | 5.51e-01 | 93.5% | 89.8% |
| 3946210 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.63 | 58.0 | 5.76e-01 | 94.0% | 94.1% |
| 4992187 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.63 | 55.0 | 5.62e-01 | 92.6% | 93.7% |
| 5039176 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.62 | 58.0 | 5.63e-01 | 100.0% | 89.3% |
| 3968941 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.62 | 60.0 | 5.62e-01 | 100.0% | 87.6% |
| 4223268 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.61 | 59.0 | 5.27e-01 | 100.0% | 93.7% |
| 3773590 | 2004.1.1.952 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, Flavi_DEAD | 0.60 | 57.0 | 4.14e-01 | 100.0% | 47.8% |
| 3259872 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.59 | 56.0 | 5.26e-01 | 99.5% | 97.6% |
| 3723910 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.59 | 56.0 | 5.16e-01 | 97.7% | 99.2% |
| 3955660 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 54.0 | 5.01e-01 | 96.3% | 78.5% |
| 3604486 | 2004.1.1.796 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, Cas3-like_C_2 | 0.57 | 53.0 | 4.13e-01 | 100.0% | 85.8% |
D3
high
residues 660-801
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07516.19 best | SecA_SW | 72.1 | 9.80e-20 | 78.2% | 31.7% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fsfB04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.87 | 83.0 | 7.08e-01 | 100.0% | 75.0% |
| 2ipcA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.86 | 81.0 | 6.64e-01 | 100.0% | 66.1% |
| 1tf5A04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.85 | 80.0 | 7.30e-01 | 100.0% | 86.8% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.83 | 44.0 | 4.56e-01 | 100.0% | 54.8% |
| 1nktA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.83 | 78.0 | 7.21e-01 | 100.0% | 86.4% |
| 6t4hA03 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.83 | 77.0 | 7.23e-01 | 99.3% | 89.0% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.80 | 75.0 | 7.00e-01 | 100.0% | 86.5% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.65 | 36.0 | 3.83e-01 | 71.8% | 60.5% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 34.0 | 3.35e-01 | 88.7% | 48.7% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.61 | 33.0 | 3.68e-01 | 84.5% | 65.5% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.57 | 28.0 | 3.51e-01 | 73.9% | 73.6% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.57 | 27.0 | 3.41e-01 | 88.0% | 74.1% |
| 1lb3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 34.0 | 3.28e-01 | 91.5% | 55.1% |
| 3pwfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 35.0 | 3.68e-01 | 84.5% | 72.5% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 34.0 | 3.31e-01 | 94.4% | 59.7% |
| 1jgcA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 34.0 | 3.26e-01 | 91.5% | 58.7% |
| 4ecgA00 | 1.20.1420.20 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif | 0.51 | 45.0 | 3.33e-01 | 96.5% | 73.9% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4307259 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.90 | 86.0 | 7.37e-01 | 100.0% | 75.2% |
| None | — | 0.90 | 86.0 | 5.34e-01 | 100.0% | 24.1% | |
| 4051877 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.90 | 85.0 | 7.14e-01 | 100.0% | 70.7% |
| None | — | 0.90 | 85.0 | 5.23e-01 | 100.0% | 21.9% | |
| None | — | 0.89 | 85.0 | 5.19e-01 | 100.0% | 21.1% | |
| 4139130 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.89 | 85.0 | 7.05e-01 | 100.0% | 68.3% |
| None | — | 0.89 | 85.0 | 5.20e-01 | 100.0% | 21.6% | |
| None | — | 0.89 | 84.0 | 5.24e-01 | 100.0% | 23.4% | |
| None | — | 0.89 | 85.0 | 5.29e-01 | 100.0% | 23.8% | |
| 4231760 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.89 | 85.0 | 7.32e-01 | 100.0% | 75.6% |
| 4257500 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.88 | 83.0 | 7.52e-01 | 100.0% | 82.2% |
| 4081008 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.88 | 83.0 | 7.21e-01 | 100.0% | 77.1% |
| None | — | 0.88 | 83.0 | 5.13e-01 | 100.0% | 22.9% | |
| None | — | 0.87 | 83.0 | 5.13e-01 | 100.0% | 21.9% | |
| None | — | 0.87 | 83.0 | 5.13e-01 | 100.0% | 22.0% | |
| 4164744 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.87 | 82.0 | 7.15e-01 | 100.0% | 77.6% |
| 4309355 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 82.0 | 5.07e-01 | 100.0% | 23.5% |
| 4329634 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 83.0 | 5.04e-01 | 100.0% | 21.3% |
| 4205983 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.86 | 82.0 | 6.96e-01 | 100.0% | 75.8% |
| 4086924 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.86 | 81.0 | 6.89e-01 | 100.0% | 71.4% |
| 3962983 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.86 | 81.0 | 6.62e-01 | 100.0% | 68.6% |
| 4389613 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.86 | 81.0 | 7.05e-01 | 100.0% | 77.1% |
| None | — | 0.86 | 81.0 | 4.96e-01 | 100.0% | 21.3% | |
| 4193218 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.85 | 81.0 | 4.94e-01 | 100.0% | 23.8% |
| 4064125 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.85 | 80.0 | 5.04e-01 | 100.0% | 24.0% |
| 4040375 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.85 | 79.0 | 6.86e-01 | 100.0% | 76.7% |
| 4578106 | 161.1.1.0 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.84 | 79.0 | 5.52e-01 | 100.0% | 38.1% |
| 4100828 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 80.0 | 5.51e-01 | 100.0% | 35.8% |
| None | — | 0.84 | 79.0 | 4.89e-01 | 100.0% | 22.1% | |
| 4645731 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 79.0 | 4.85e-01 | 100.0% | 27.9% |
| 4037328 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.84 | 79.0 | 7.00e-01 | 100.0% | 77.4% |
| 4665973 | 161.1.1.0 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.84 | 78.0 | 4.92e-01 | 100.0% | 22.4% |
| 4564223 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.83 | 79.0 | 6.78e-01 | 100.0% | 76.2% |
| 2670639 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.83 | 78.0 | 6.81e-01 | 100.0% | 75.1% |
| 3833753 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 78.0 | 4.78e-01 | 100.0% | 21.5% |
| 397246 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.83 | 78.0 | 6.50e-01 | 100.0% | 68.1% |
| 3676199 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 78.0 | 4.75e-01 | 100.0% | 23.9% |
| 4308332 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.83 | 78.0 | 6.92e-01 | 100.0% | 84.6% |
| 4037650 | 161.1.1.0 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.83 | 78.0 | 4.81e-01 | 100.0% | 27.3% |
| None | — | 0.83 | 77.0 | 4.78e-01 | 100.0% | 21.0% | |
| None | — | 0.83 | 77.0 | 4.72e-01 | 100.0% | 23.5% | |
| 4388318 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.83 | 77.0 | 6.64e-01 | 100.0% | 75.8% |
| 4634269 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.82 | 76.0 | 6.67e-01 | 100.0% | 84.4% |
| None | — | 0.82 | 77.0 | 4.85e-01 | 100.0% | 23.8% | |
| 4064274 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.82 | 76.0 | 4.76e-01 | 100.0% | 21.9% |
| 4480620 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 76.0 | 4.65e-01 | 100.0% | 19.9% |
| 4233725 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.81 | 67.0 | 6.33e-01 | 100.0% | 74.4% |
| 4384627 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.80 | 74.0 | 6.22e-01 | 100.0% | 84.7% |
| None | — | 0.79 | 74.0 | 4.68e-01 | 100.0% | 23.6% | |
| 4425288 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 73.0 | 4.55e-01 | 100.0% | 26.7% |
| 4438101 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.79 | 73.0 | 6.54e-01 | 100.0% | 80.8% |
| 4481370 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.78 | 72.0 | 6.58e-01 | 100.0% | 82.7% |
| 4227076 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.78 | 73.0 | 6.62e-01 | 100.0% | 81.6% |
| 4267105 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.78 | 72.0 | 6.05e-01 | 100.0% | 84.3% |
| 4672752 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.77 | 71.0 | 6.44e-01 | 100.0% | 83.7% |
| 4983374 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.61 | 40.0 | 4.17e-01 | 76.1% | 71.5% |
| 3793323 | 174.1.1.31 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7027 | 0.51 | 44.0 | 4.26e-01 | 97.9% | 83.1% |
| 3618827 | 5050.1.1.5 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Folate_carrier | 0.50 | 45.0 | 3.14e-01 | 97.9% | 85.3% |
D4
medium
residues 5-87
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07517.21 best | SecA_DEAD | 55.8 | 6.00e-15 | 100.0% | 27.2% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nktA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.90 | 84.0 | 5.57e-01 | 100.0% | 31.3% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 51.0 | 3.92e-01 | 77.1% | 74.2% |
| 3acxA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.65 | 51.0 | 3.56e-01 | 85.5% | 92.6% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 48.0 | 4.31e-01 | 95.2% | 62.8% |
| 5mj6A04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.58 | 43.0 | 2.87e-01 | 78.3% | 95.5% |
| 2jaqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.56e-01 | 88.0% | 85.2% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.56 | 40.0 | 3.96e-01 | 74.7% | 72.4% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.55 | 39.0 | 3.63e-01 | 74.7% | 61.0% |
| 6xy4A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.55 | 47.0 | 4.18e-01 | 97.6% | 77.2% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 36.0 | 3.72e-01 | 71.1% | 92.3% |
| 7v7yA01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.52 | 44.0 | 3.11e-01 | 97.6% | 77.2% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.52 | 37.0 | 3.82e-01 | 75.9% | 83.3% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 40.0 | 3.70e-01 | 88.0% | 76.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.95 | 91.0 | 5.11e-01 | 100.0% | 11.4% | |
| None | — | 0.95 | 85.0 | 4.87e-01 | 94.0% | 11.8% | |
| None | — | 0.94 | 87.0 | 5.01e-01 | 100.0% | 12.8% | |
| 4064125 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 85.0 | 4.87e-01 | 94.0% | 12.0% |
| None | — | 0.94 | 85.0 | 4.81e-01 | 94.0% | 11.1% | |
| 3676199 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 90.0 | 5.02e-01 | 100.0% | 10.4% |
| None | — | 0.94 | 85.0 | 5.77e-01 | 94.0% | 31.2% | |
| None | — | 0.94 | 89.0 | 5.09e-01 | 100.0% | 12.6% | |
| None | — | 0.94 | 84.0 | 4.75e-01 | 94.0% | 10.7% | |
| None | — | 0.93 | 88.0 | 5.05e-01 | 100.0% | 12.6% | |
| 4645731 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.93 | 83.0 | 4.70e-01 | 94.0% | 10.5% |
| 3833753 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.93 | 88.0 | 4.95e-01 | 100.0% | 10.7% |
| None | — | 0.93 | 88.0 | 4.92e-01 | 100.0% | 10.4% | |
| 4488310 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.92 | 87.0 | 4.95e-01 | 100.0% | 11.5% |
| 3679227 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.91 | 87.0 | 5.12e-01 | 100.0% | 15.8% |
| None | — | 0.90 | 84.0 | 4.87e-01 | 100.0% | 13.0% | |
| 4298231 | 2004.1.1.149 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD | 0.89 | 84.0 | 5.39e-01 | 100.0% | 25.5% |
| 4047873 | 2004.1.1.472 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD, P-loop_SecA | 0.84 | 77.0 | 4.64e-01 | 100.0% | 16.0% |
| 5066065 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.71 | 49.0 | 4.29e-01 | 72.3% | 75.2% |
| 3785508 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.57 | 37.0 | 3.93e-01 | 97.6% | 74.7% |
| 4216418 | 4974.1.1.2 ↗ | alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain › Cas13a_endoribonuclease | 0.57 | 49.0 | 4.04e-01 | 98.8% | 70.0% |
| 3969202 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.57 | 43.0 | 4.00e-01 | 81.9% | 83.3% |
| 3606093 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.52 | 39.0 | 2.77e-01 | 79.5% | 93.8% |
| 4966460 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.50 | 39.0 | 3.65e-01 | 81.9% | 76.0% |
D5
medium
residues 88-221_362-403
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00270.36 best | DEAD | 28.1 | 2.20e-06 | 91.5% | 88.6% |
| PF07517.21 | SecA_DEAD | 209.5 | 9.50e-62 | 77.8% | 46.6% |
| PF07517.21 | SecA_DEAD | 37.9 | 1.80e-09 | 18.2% | 10.3% |