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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00162
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00162
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-131
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13560.13 best | HTH_31 | 29.8 | 8.50e-07 | 43.5% | 82.8% |
| PF01381.29 | HTH_3 | 27.8 | 2.80e-06 | 42.0% | 69.1% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y7yA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.91 | 46.0 | 6.51e-01 | 71.8% | 97.1% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.83 | 45.0 | 5.92e-01 | 70.2% | 93.4% |
| 2xcjA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.78 | 44.0 | 5.57e-01 | 71.0% | 88.1% |
| 1x57A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.76 | 42.0 | 5.01e-01 | 71.8% | 79.1% |
| 1lliA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 43.0 | 5.18e-01 | 72.5% | 91.0% |
| 1b0nA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 44.0 | 4.98e-01 | 72.5% | 91.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285035 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.91 | 60.0 | 7.25e-01 | 76.3% | 97.8% |
| 2773 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.87 | 47.0 | 6.21e-01 | 71.0% | 92.2% |
| 4125247 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.80 | 45.0 | 5.65e-01 | 73.3% | 87.1% |
| 3587762 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.79 | 52.0 | 6.22e-01 | 76.3% | 98.9% |
| 4033847 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.73 | 49.0 | 5.52e-01 | 78.6% | 86.7% |
| 3987118 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.71 | 43.0 | 5.31e-01 | 72.5% | 94.1% |
| 3591049 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.71 | 44.0 | 4.22e-01 | 71.0% | 54.7% |
| 3954613 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.68 | 55.0 | 5.66e-01 | 83.2% | 91.2% |
| 4536849 | 10.12.1.146 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HTH_3 | 0.67 | 49.0 | 3.33e-01 | 74.8% | 47.6% |
| 4954379 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.60 | 43.0 | 4.68e-01 | 74.0% | 97.3% |
| 3594743 | 1017.1.1.0 ↗ | a+b two layers › Rrs1 › Rrs1 › Rrs1 | 0.58 | 22.0 | 2.91e-01 | 87.8% | 60.0% |
| 3711612 | 1017.1.1.1 ↗ | a+b two layers › Rrs1 › Rrs1 › Rrs1 › RRS1 | 0.57 | 23.0 | 2.95e-01 | 76.3% | 62.7% |
| 3517620 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 42.0 | 3.12e-01 | 75.6% | 59.7% |
| 3954382 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 39.0 | 3.83e-01 | 71.0% | 92.4% |
| 3790174 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.55 | 44.0 | 2.94e-01 | 85.5% | 83.9% |
| 3479321 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.55 | 39.0 | 2.79e-01 | 72.5% | 68.6% |
| 4954449 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.54 | 32.0 | 3.60e-01 | 74.8% | 75.8% |