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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00185
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00185
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 61-163
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12019.14 best | GspH | 26.3 | 1.20e-05 | 94.2% | 82.4% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ipuA00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.75 | 67.0 | 6.08e-01 | 100.0% | 72.3% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.68 | 63.0 | 5.56e-01 | 100.0% | 79.9% |
| 2ky8A00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.62 | 29.0 | 3.47e-01 | 92.2% | 65.7% |
| 1lf6A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 46.0 | 3.38e-01 | 100.0% | 34.4% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.54 | 34.0 | 3.77e-01 | 84.5% | 80.5% |
| 1q5qA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 38.0 | 2.99e-01 | 95.1% | 36.1% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.51 | 42.0 | 3.08e-01 | 93.2% | 42.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967096 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.86 | 74.0 | 6.54e-01 | 100.0% | 66.4% |
| 4368957 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.72 | 67.0 | 5.76e-01 | 100.0% | 74.2% |
| 3983524 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.70 | 65.0 | 5.67e-01 | 100.0% | 82.6% |
| 4498349 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.58 | 32.0 | 2.67e-01 | 85.4% | 28.9% |
| 3910482 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.57 | 32.0 | 3.88e-01 | 98.1% | 86.2% |
| 3706670 | 292.2.1.6 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 | 0.57 | 34.0 | 3.36e-01 | 92.2% | 55.5% |
| 6447 | 243.8.1.2 ↗ | a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein › UDI | 0.53 | 33.0 | 3.71e-01 | 84.5% | 79.5% |
| 3665166 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 42.0 | 3.07e-01 | 100.0% | 30.5% |
| 3775858 | 5.1.4.547 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF4800, NBCH_WD40 | 0.51 | 45.0 | 3.05e-01 | 100.0% | 76.0% |