←Back to structures
S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00223
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00223
Identity
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-84
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 38.0 | 4.07e-01 | 91.0% | 59.4% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 47.0 | 4.44e-01 | 89.7% | 66.0% |
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 33.0 | 3.49e-01 | 84.6% | 56.7% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.59 | 48.0 | 4.26e-01 | 96.2% | 73.4% |
| 5swcD00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.59 | 44.0 | 3.28e-01 | 80.8% | 64.1% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.56 | 48.0 | 4.21e-01 | 96.2% | 90.7% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 32.0 | 3.38e-01 | 88.5% | 65.7% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 42.0 | 3.97e-01 | 84.6% | 90.2% |
| 3p9dE01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 42.0 | 2.98e-01 | 89.7% | 31.3% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 37.0 | 3.63e-01 | 88.5% | 69.0% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 39.0 | 2.71e-01 | 83.3% | 32.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589236 | 3291.1.1.142 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF7649 | 0.63 | 48.0 | 4.52e-01 | 82.1% | 83.2% |
| 3964012 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.62 | 49.0 | 4.34e-01 | 84.6% | 70.9% |
| 3538468 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.60 | 39.0 | 3.45e-01 | 96.2% | 43.2% |
| 3812840 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.60 | 45.0 | 4.69e-01 | 88.5% | 91.4% |
| 4610257 | 6130.1.1.0 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain | 0.59 | 43.0 | 4.61e-01 | 94.9% | 93.8% |
| 3709879 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.59 | 45.0 | 4.63e-01 | 91.0% | 88.0% |
| None | — | 0.56 | 49.0 | 3.50e-01 | 100.0% | 50.2% | |
| 4238054 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.56 | 49.0 | 3.50e-01 | 100.0% | 50.2% |
| 3281672 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 40.0 | 3.11e-01 | 82.1% | 90.5% |
| 3289973 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.53 | 41.0 | 3.49e-01 | 84.6% | 93.3% |
| 3973396 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.51 | 41.0 | 3.90e-01 | 89.7% | 73.7% |
| 3892703 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.51 | 40.0 | 3.74e-01 | 87.2% | 100.0% |