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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00260
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00260
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 58-398
Domain cluster:
rep: IMGVR_UViG_3300020369_000079-3300020369-Ga0211709_100073652__D2-241
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09587.16 best | PGA_cap | 205.5 | 1.40e-60 | 77.1% | 100.0% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t70A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.77 | 57.0 | 6.63e-01 | 88.9% | 100.0% |
| 2fb6A00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.67 | 25.0 | 4.29e-01 | 76.5% | 98.3% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.67 | 60.0 | 6.00e-01 | 94.4% | 91.4% |
| 1qhwA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.66 | 55.0 | 5.89e-01 | 99.4% | 98.7% |
| 5fc1A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.65 | 61.0 | 5.73e-01 | 98.5% | 96.3% |
| 2xmoA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.63 | 56.0 | 5.78e-01 | 99.4% | 97.5% |
| 7tbvB02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 43.0 | 4.98e-01 | 98.5% | 95.4% |
| 3oa3A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 40.0 | 4.62e-01 | 99.7% | 86.2% |
| 2o7sA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 42.0 | 4.96e-01 | 99.4% | 99.1% |
| 3n4eA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.61 | 41.0 | 4.60e-01 | 98.8% | 85.6% |
| 1a5aA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 44.0 | 5.00e-01 | 99.7% | 96.9% |
| 3qfmA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.60 | 43.0 | 4.90e-01 | 94.1% | 95.7% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 17.0 | 3.19e-01 | 79.8% | 86.8% |
| 5visB00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.57 | 43.0 | 4.78e-01 | 99.7% | 97.4% |
| 4cyfA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.57 | 46.0 | 4.99e-01 | 85.0% | 98.3% |
| 2qjgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 41.0 | 4.55e-01 | 94.1% | 93.8% |
| 1xf1A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.55 | 25.0 | 3.79e-01 | 88.0% | 99.3% |
| 4rctA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.54 | 23.0 | 3.12e-01 | 78.3% | 70.8% |
| 2fokA03 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.54 | 29.0 | 3.91e-01 | 95.0% | 98.9% |
| 6fcxA01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.54 | 42.0 | 4.60e-01 | 100.0% | 97.9% |
| 3bf0C03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 27.0 | 3.72e-01 | 88.0% | 95.8% |
| 3aptA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.53 | 43.0 | 4.65e-01 | 92.7% | 98.6% |
| 1xo1A02 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.53 | 23.0 | 3.29e-01 | 96.8% | 83.6% |
| 2j6pA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.53 | 23.0 | 3.43e-01 | 96.2% | 91.7% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 25.0 | 3.57e-01 | 99.7% | 96.8% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951967 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.91 | 76.0 | 8.10e-01 | 98.5% | 96.0% |
| 4250091 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.88 | 81.0 | 8.02e-01 | 99.7% | 91.1% |
| 4953132 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.87 | 78.0 | 8.05e-01 | 99.4% | 97.5% |
| 3726974 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.83 | 81.0 | 7.83e-01 | 100.0% | 99.5% |
| 3955969 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.82 | 79.0 | 7.63e-01 | 99.7% | 98.1% |
| 3732238 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.79 | 77.0 | 7.44e-01 | 99.4% | 98.1% |
| 3722551 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.79 | 76.0 | 7.50e-01 | 99.4% | 95.0% |
| 3671132 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.65 | 59.0 | 5.65e-01 | 99.4% | 84.7% |
| 5022707 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.62 | 58.0 | 5.71e-01 | 99.4% | 95.4% |
| 3960045 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 14.0 | 2.69e-01 | 99.4% | 70.0% |
| 4947852 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.56 | 25.0 | 3.71e-01 | 76.2% | 92.2% |
| 5000001 | 2007.3.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 | 0.56 | 27.0 | 3.87e-01 | 85.3% | 97.4% |
| 4339598 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.56 | 26.0 | 3.79e-01 | 95.0% | 96.7% |
| 4058415 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.55 | 26.0 | 3.80e-01 | 94.7% | 97.3% |
| 5078102 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.55 | 40.0 | 4.60e-01 | 94.1% | 100.0% |
| 4202420 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.54 | 25.0 | 3.71e-01 | 94.7% | 96.7% |
| 4190563 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.54 | 25.0 | 3.67e-01 | 93.5% | 95.5% |
| 3278814 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.54 | 25.0 | 3.70e-01 | 82.7% | 100.0% |
| 4946872 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 26.0 | 3.63e-01 | 79.2% | 92.7% |
| 3378739 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.53 | 14.0 | 2.80e-01 | 100.0% | 85.5% |
| 4957763 | 2007.3.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 | 0.53 | 26.0 | 3.67e-01 | 85.6% | 95.1% |
| 5001440 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.53 | 26.0 | 3.73e-01 | 94.7% | 96.4% |
| 5044899 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 38.0 | 4.22e-01 | 96.5% | 92.6% |
| 3347996 | 2002.1.1.43 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth | 0.52 | 45.0 | 4.67e-01 | 100.0% | 96.3% |
| 3238556 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 31.0 | 3.91e-01 | 97.4% | 97.6% |
| 1160074 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.51 | 26.0 | 3.64e-01 | 78.0% | 100.0% |
| 3720365 | 2002.1.1.43 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth | 0.51 | 45.0 | 4.61e-01 | 100.0% | 96.7% |
| 5045017 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.51 | 25.0 | 3.55e-01 | 83.3% | 94.1% |
| 3286818 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 20.0 | 3.05e-01 | 99.1% | 87.6% |