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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00267
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00267
Identity
- Kingdom:
- phage
Quality
95.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-81
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.65 | 51.0 | 5.07e-01 | 83.3% | 86.3% |
| 2owaA01 | 1.10.220.150 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein | 0.57 | 46.0 | 3.98e-01 | 88.5% | 89.2% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2036620 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.88 | 67.0 | 6.34e-01 | 79.5% | 72.8% |
| 3588377 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.88 | 68.0 | 6.13e-01 | 79.5% | 67.0% |
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.87 | 73.0 | 7.65e-01 | 88.5% | 100.0% |
| 5080395 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.86 | 75.0 | 6.47e-01 | 92.3% | 69.6% |
| 4056680 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.85 | 73.0 | 6.18e-01 | 91.0% | 84.2% |
| 5039655 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.84 | 71.0 | 7.07e-01 | 89.7% | 98.8% |
| 3948700 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.83 | 71.0 | 5.94e-01 | 89.7% | 81.5% |
| 3963335 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.83 | 71.0 | 5.88e-01 | 91.0% | 76.7% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 70.0 | 5.78e-01 | 91.0% | 61.2% |
| 3839237 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.82 | 71.0 | 5.42e-01 | 93.6% | 52.9% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.81 | 66.0 | 6.74e-01 | 85.9% | 94.7% |
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.81 | 63.0 | 6.27e-01 | 82.1% | 85.0% |
| 5082962 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.80 | 69.0 | 6.10e-01 | 92.3% | 67.3% |
| 4021854 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.80 | 65.0 | 4.85e-01 | 85.9% | 60.2% |
| 4964156 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.80 | 68.0 | 5.89e-01 | 91.0% | 81.7% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.79 | 61.0 | 6.60e-01 | 80.8% | 98.5% |
| 3685300 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.79 | 67.0 | 4.79e-01 | 92.3% | 63.2% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.79 | 66.0 | 6.20e-01 | 91.0% | 93.7% |
| 3952892 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 65.0 | 5.52e-01 | 89.7% | 59.2% |
| 4937899 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 60.0 | 5.74e-01 | 82.1% | 77.8% |
| 3183345 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.77 | 65.0 | 5.19e-01 | 91.0% | 88.0% |
| 5073918 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 65.0 | 6.09e-01 | 92.3% | 86.3% |
| 3944337 | 378.1.1.28 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NinG | 0.74 | 61.0 | 5.12e-01 | 91.0% | 61.5% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.74 | 59.0 | 6.24e-01 | 94.9% | 97.1% |
| 3976723 | 378.1.1.28 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NinG | 0.73 | 61.0 | 5.25e-01 | 92.3% | 63.2% |
| 3950953 | 377.1.1.78 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 | 0.73 | 59.0 | 6.17e-01 | 94.9% | 97.1% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 64.0 | 6.05e-01 | 98.7% | 89.5% |
| 3952818 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.73 | 59.0 | 6.10e-01 | 94.9% | 93.2% |
| 4969429 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 66.0 | 5.16e-01 | 100.0% | 70.0% |
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.72 | 60.0 | 5.87e-01 | 91.0% | 85.9% |
| 2628026 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.71 | 54.0 | 3.97e-01 | 80.8% | 40.1% |
| 3978374 | 378.1.1.18 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF968 | 0.70 | 61.0 | 5.97e-01 | 94.9% | 88.2% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 58.0 | 5.02e-01 | 92.3% | 59.2% |
| 3196107 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.70 | 58.0 | 4.54e-01 | 92.3% | 78.2% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.66 | 53.0 | 4.76e-01 | 88.5% | 94.5% |
| 3602299 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.66 | 57.0 | 4.65e-01 | 98.7% | 76.0% |
D2
medium
residues 90-143
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6juyC01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.61 | 51.0 | 3.36e-01 | 100.0% | 85.6% |
| 5ccbA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 49.0 | 3.35e-01 | 96.3% | 54.8% |
| 1o54A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 47.0 | 3.32e-01 | 92.6% | 52.3% |
| 3busB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 47.0 | 3.11e-01 | 92.6% | 44.6% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.34e-01 | 92.6% | 59.1% |
| 2o57A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 47.0 | 3.41e-01 | 94.4% | 69.7% |
| 3gr0D01 | 3.30.70.1780 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 39.0 | 4.34e-01 | 70.4% | 97.6% |
| 1x19A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.39e-01 | 92.6% | 66.9% |
| 3f4wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 44.0 | 3.07e-01 | 90.7% | 72.5% |
| 2esrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 45.0 | 3.29e-01 | 90.7% | 65.0% |
| 4xqkA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 44.0 | 3.40e-01 | 94.4% | 78.5% |
| 5fcdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 47.0 | 3.21e-01 | 100.0% | 51.8% |
| 2as0A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 45.0 | 3.09e-01 | 92.6% | 55.0% |
| 4e8uA00 | 3.30.70.2890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › XS domain | 0.55 | 40.0 | 2.96e-01 | 81.5% | 59.0% |
| 3hhfA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 38.0 | 3.17e-01 | 70.4% | 58.4% |
| 2levA00 | 4.10.430.10 | Few Secondary Structures › Irregular › H-NS DNA Binding Protein › Histone-like protein H-NS, C-terminal domain | 0.54 | 36.0 | 3.61e-01 | 85.2% | 66.7% |
| 1lp8A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.54 | 42.0 | 3.01e-01 | 90.7% | 58.0% |
| 2y9mB00 | 3.40.50.11730 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peroxisome assembly protein 22 | 0.54 | 43.0 | 3.41e-01 | 90.7% | 60.7% |
| 2v5cA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.53 | 41.0 | 3.08e-01 | 90.7% | 33.1% |
| 4pneA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 2.83e-01 | 94.4% | 91.5% |
| 3olcX03 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.53 | 44.0 | 3.90e-01 | 100.0% | 69.0% |
| 2iuyA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 39.0 | 2.90e-01 | 87.0% | 37.5% |
| 2ql3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 36.0 | 3.06e-01 | 74.1% | 92.9% |
| 3nzkA01 | 3.30.230.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 | 0.51 | 38.0 | 2.97e-01 | 79.6% | 68.0% |
| 3bl4A01 | 3.40.1680.10 | Alpha Beta › 3-Layer(aba) Sandwich › yp_829618.1 fold › yp_829618.1 domain like | 0.51 | 36.0 | 3.43e-01 | 79.6% | 72.2% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 37.0 | 2.97e-01 | 85.2% | 67.7% |
| 2o1mA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 41.0 | 3.26e-01 | 94.4% | 52.1% |
| 3rpwA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 39.0 | 3.04e-01 | 94.4% | 59.6% |
| 5cfvA01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.50 | 37.0 | 3.09e-01 | 83.3% | 53.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3628818 | 2003.1.5.209 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF29244 | 0.60 | 46.0 | 3.51e-01 | 83.3% | 62.4% |
| 3960235 | 2003.1.5.152 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS, Methyltransf_25 | 0.58 | 47.0 | 3.01e-01 | 92.6% | 35.7% |
| 4179596 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.58 | 46.0 | 3.45e-01 | 90.7% | 52.4% |
| 1030896 | 2003.1.5.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 | 0.58 | 46.0 | 3.28e-01 | 92.6% | 52.1% |
| 4009502 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.57 | 38.0 | 3.20e-01 | 70.4% | 56.0% |
| 3971175 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.56 | 38.0 | 3.10e-01 | 70.4% | 50.0% |
| 3973666 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.56 | 38.0 | 3.03e-01 | 70.4% | 50.4% |
| 3967633 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.55 | 36.0 | 3.03e-01 | 70.4% | 56.2% |
| 4342904 | 107.1.1.0 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c | 0.54 | 44.0 | 3.24e-01 | 92.6% | 82.0% |
| 363486 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.53 | 40.0 | 4.07e-01 | 90.7% | 84.6% |
| 4940604 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.53 | 44.0 | 3.19e-01 | 98.1% | 42.9% |
| 3978722 | 3261.1.1.2 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_1st | 0.52 | 36.0 | 3.62e-01 | 77.8% | 93.3% |
| 4975902 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.52 | 37.0 | 3.19e-01 | 81.5% | 88.6% |
| 4498604 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 44.0 | 3.33e-01 | 100.0% | 88.7% |
| 4939163 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.51 | 40.0 | 2.80e-01 | 94.4% | 81.0% |
| 3999963 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 40.0 | 3.21e-01 | 96.3% | 91.5% |
| 3948425 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.50 | 34.0 | 2.85e-01 | 70.4% | 51.4% |
| 2394001 | 3521.1.1.1 ↗ | a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Flu_PB2_5th | 0.50 | 37.0 | 2.61e-01 | 87.0% | 67.7% |