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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00283

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00283

Identity

Kingdom:
phage

Quality

91.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-158
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18143.7 best HAD_SAK_2 82.3 6.30e-23 90.1% 95.7%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cqzB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.70 59.0 6.28e-01 94.7% 100.0%
3kzxA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.70 59.0 6.22e-01 95.4% 100.0%
4dccA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.70 55.0 5.94e-01 94.7% 97.7%
3ef0A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.69 64.0 5.70e-01 100.0% 92.1%
2i6xA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.69 56.0 5.96e-01 97.4% 97.8%
4uavA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.68 63.0 6.23e-01 100.0% 96.9%
1cqzA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.68 60.0 5.93e-01 94.7% 100.0%
4uw9A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 59.0 6.11e-01 99.3% 100.0%
3k1zA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 61.0 6.06e-01 98.0% 100.0%
2ybdA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 57.0 5.92e-01 94.7% 96.5%
3e8mA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.66 59.0 5.78e-01 95.4% 91.5%
3kd3A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 57.0 5.69e-01 92.1% 100.0%
2no4B01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 58.0 5.85e-01 95.4% 96.7%
2dstA00 3.40.50.12270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 43.0 4.71e-01 100.0% 82.0%
2om6A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 59.0 5.92e-01 97.4% 98.0%
2p9jB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 58.0 5.70e-01 96.1% 93.2%
3h05B00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 49.0 4.83e-01 87.5% 74.2%
3q3eA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.63 59.0 5.44e-01 100.0% 82.7%
6xl1A01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.63 52.0 5.20e-01 100.0% 86.5%
1xmxA01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.63 50.0 5.22e-01 100.0% 91.5%
1gs5A00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.62 56.0 4.69e-01 99.3% 98.4%
3l49A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 45.0 4.57e-01 75.7% 100.0%
2vshA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 55.0 4.85e-01 100.0% 87.9%
1pswA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.60 54.0 5.16e-01 97.4% 89.8%
3ca8A02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 48.0 4.82e-01 86.2% 92.9%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 49.0 5.17e-01 100.0% 100.0%
1vpaA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 54.0 4.73e-01 100.0% 86.0%
1nbaB00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.58 53.0 4.47e-01 100.0% 80.6%
1o6cB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 50.0 4.50e-01 96.1% 93.1%
4kp1A01 3.30.499.10 Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 0.57 45.0 3.78e-01 100.0% 47.2%
1dtyA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 42.0 3.52e-01 77.0% 67.8%
7og5F01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.56 48.0 4.81e-01 92.1% 100.0%
5dxfB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 49.0 4.19e-01 99.3% 94.3%
6d6zA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.56 51.0 4.41e-01 100.0% 81.4%
8a0cA02 3.40.50.12580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CDP-glycerol glycerophosphotransferase, C-terminal domain 0.56 51.0 4.67e-01 100.0% 77.9%
4cqbA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 48.0 3.92e-01 96.7% 96.7%
1qwjB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 51.0 4.43e-01 100.0% 84.3%
3ktcA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 50.0 3.92e-01 100.0% 96.7%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 50.0 4.24e-01 100.0% 71.3%
3o8lA03 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 50.0 4.48e-01 100.0% 92.1%
1u9cA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 49.0 4.33e-01 98.0% 98.6%
2pgnA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.54 44.0 4.12e-01 95.4% 71.4%
4ncbA05 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 3.91e-01 74.3% 89.8%
3vu9B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 3.75e-01 80.3% 77.5%
3zokA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 4.06e-01 86.2% 86.2%
2pgnA03 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.52 42.0 3.80e-01 87.5% 77.5%
2czqA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 4.19e-01 95.4% 95.6%
7c79I01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 47.0 4.07e-01 100.0% 88.7%
1ni5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 46.0 4.09e-01 100.0% 89.9%
3i0zA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 39.0 3.78e-01 81.6% 84.7%
3bf7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.83e-01 97.4% 92.9%
1qo2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 3.78e-01 94.7% 100.0%
5uqiA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 38.0 3.61e-01 79.6% 80.9%
4fleA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 44.0 4.08e-01 95.4% 97.9%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 45.0 3.87e-01 98.0% 85.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3584528 2006.1.1.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_2 0.77 72.0 6.94e-01 98.0% 92.9%
5073536 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.71 63.0 5.48e-01 95.4% 95.1%
4999216 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.70 62.0 5.39e-01 94.1% 93.8%
3594808 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.70 58.0 5.00e-01 86.8% 86.4%
5059129 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.70 63.0 5.59e-01 96.7% 99.1%
4994524 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.70 63.0 5.49e-01 97.4% 96.0%
3708844 2006.1.1.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.70 65.0 5.66e-01 100.0% 75.9%
3214495 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.69 62.0 5.19e-01 95.4% 94.8%
3940372 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.69 62.0 5.03e-01 95.4% 86.8%
4977471 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.69 62.0 4.95e-01 97.4% 99.0%
4052544 2006.1.1.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PNK3P 0.68 61.0 5.93e-01 95.4% 98.2%
4994385 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.67 59.0 5.11e-01 94.1% 99.1%
5001495 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.67 57.0 5.53e-01 89.5% 100.0%
4405649 2003.1.10.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › ATPgrasp_N 0.64 45.0 4.78e-01 100.0% 83.8%
3100142 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.63 59.0 5.32e-01 100.0% 77.5%
3740291 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.63 57.0 4.91e-01 98.0% 98.7%
3796242 2003.1.1.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N 0.61 56.0 4.97e-01 100.0% 86.4%
3573985 7516.1.1.35 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch 0.60 48.0 4.22e-01 100.0% 56.9%
5077342 7592.1.1.6 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N 0.60 50.0 5.24e-01 100.0% 98.6%
3836058 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.60 49.0 5.03e-01 87.5% 97.2%
4492252 7516.1.1.1 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.59 55.0 4.57e-01 100.0% 85.9%
5070067 7516.1.1.1 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.59 55.0 4.60e-01 100.0% 87.6%
4078148 7516.1.1.5 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD 0.58 53.0 4.62e-01 100.0% 87.6%
4310954 7512.1.1.8 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 0.58 52.0 4.69e-01 100.0% 97.1%
2894364 7512.1.1.83 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT, EryCIII-like_C 0.57 52.0 4.74e-01 100.0% 78.6%
4954066 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.57 52.0 4.81e-01 100.0% 77.9%
5015721 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.57 46.0 3.80e-01 87.5% 53.2%
3288388 2003.1.1.61 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR 0.57 51.0 4.25e-01 98.0% 85.8%
3583359 2003.1.1.193 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N, G6PD_C 0.56 51.0 4.43e-01 100.0% 72.3%
None 0.56 46.0 3.50e-01 87.5% 43.4%
4984062 7592.1.1.3 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.56 49.0 5.01e-01 99.3% 98.0%
137551 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.55 50.0 3.93e-01 100.0% 96.7%
5051848 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 50.0 3.95e-01 100.0% 68.4%
4935337 7516.1.1.24 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 0.55 50.0 4.49e-01 100.0% 79.1%
4999344 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.55 50.0 4.45e-01 100.0% 93.5%
3971966 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.54 42.0 4.37e-01 95.4% 87.9%
5065533 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.54 50.0 4.28e-01 100.0% 78.8%
4887824 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.54 43.0 4.27e-01 97.4% 80.6%
3194671 7516.1.1.99 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF5672 0.54 49.0 4.21e-01 100.0% 74.7%
4203433 7516.1.1.5 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD 0.54 49.0 4.38e-01 100.0% 86.0%
5043079 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.53 46.0 3.53e-01 94.7% 95.8%
3410720 2003.1.5.95 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM13 0.51 43.0 3.49e-01 90.8% 80.7%
3369678 7542.1.2.1 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › Aconitase 0.51 36.0 4.05e-01 86.2% 98.2%
5063181 2007.6.1.12 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › GKRP_SIS_N 0.51 41.0 3.43e-01 87.5% 59.3%
3904073 2496.1.1.0 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.51 42.0 4.24e-01 90.8% 89.7%
4322077 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.51 46.0 4.03e-01 100.0% 88.0%
4044690 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.50 46.0 3.91e-01 100.0% 84.5%