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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00317
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00317
Identity
- Kingdom:
- phage
Quality
57.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-138
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ra1A01 | 1.20.58.790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 43.0 | 4.90e-01 | 89.1% | 85.7% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.61 | 45.0 | 4.89e-01 | 97.7% | 94.3% |
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.60 | 50.0 | 4.93e-01 | 97.7% | 83.5% |
| 7k18A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.58 | 48.0 | 4.79e-01 | 97.7% | 85.1% |
| 2cmrA00 | 1.20.58.1860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 53.0 | 4.60e-01 | 99.2% | 85.9% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 41.0 | 4.26e-01 | 94.6% | 79.2% |
| 4l6rA02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 48.0 | 3.72e-01 | 89.9% | 72.6% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.55 | 39.0 | 3.32e-01 | 72.9% | 73.8% |
| 1sziA02 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.55 | 44.0 | 4.41e-01 | 96.9% | 83.2% |
| 4dnhA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 43.0 | 3.10e-01 | 84.5% | 96.1% |
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.54 | 45.0 | 4.50e-01 | 95.3% | 88.5% |
| 3emlA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 47.0 | 3.69e-01 | 97.7% | 84.7% |
| 2e9xD01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 4.10e-01 | 82.9% | 77.4% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 38.0 | 3.58e-01 | 74.4% | 60.8% |
| 1f1mA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.51 | 44.0 | 4.17e-01 | 96.9% | 76.5% |
| 1h5zA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 38.0 | 2.70e-01 | 100.0% | 23.5% |
| 2yayA02 | 1.20.1670.10 | Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase | 0.51 | 42.0 | 4.14e-01 | 94.6% | 85.2% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 39.0 | 3.56e-01 | 82.9% | 73.2% |
| 3fhnA03 | 1.10.357.100 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Dsl1p vesicle tethering complex, Tip20p subunit, domain C | 0.50 | 40.0 | 3.63e-01 | 85.3% | 89.7% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.50 | 36.0 | 3.69e-01 | 72.9% | 88.5% |
| 2p61A00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.50 | 35.0 | 3.68e-01 | 96.1% | 81.6% |
| 3drnB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 30.0 | 2.91e-01 | 99.2% | 50.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940488 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 53.0 | 3.85e-01 | 95.3% | 73.5% |
| 3216129 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.60 | 47.0 | 4.84e-01 | 96.9% | 87.2% |
| 3781775 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 52.0 | 3.61e-01 | 93.0% | 99.5% |
| 3565707 | 601.11.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Perilipin | 0.59 | 47.0 | 4.12e-01 | 95.3% | 57.4% |
| 4220767 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.58 | 51.0 | 4.68e-01 | 97.7% | 75.2% |
| 3507407 | 5069.1.1.54 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrome_B, Cytochrom_B_N_2 | 0.58 | 50.0 | 4.42e-01 | 95.3% | 69.5% |
| 3827271 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.58 | 47.0 | 4.76e-01 | 97.7% | 87.7% |
| 3221746 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 41.0 | 3.33e-01 | 72.9% | 63.7% |
| 3885641 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.57 | 42.0 | 3.65e-01 | 82.9% | 50.0% |
| 4162384 | 633.23.1.37 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PF29133 | 0.56 | 42.0 | 3.50e-01 | 79.1% | 83.4% |
| 3542308 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.56 | 42.0 | 3.58e-01 | 82.2% | 47.4% |
| 3698882 | 633.23.1.23 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin | 0.56 | 43.0 | 3.71e-01 | 82.2% | 52.0% |
| 3503188 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.56 | 42.0 | 3.68e-01 | 82.2% | 53.2% |
| 3630405 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.56 | 42.0 | 3.51e-01 | 82.9% | 45.9% |
| 4970236 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 40.0 | 3.79e-01 | 82.2% | 61.3% |
| 3936161 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.55 | 41.0 | 3.51e-01 | 82.9% | 47.0% |
| 3407222 | 633.23.1.17 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA | 0.55 | 40.0 | 3.25e-01 | 76.0% | 78.8% |
| 3932908 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.55 | 41.0 | 3.45e-01 | 77.5% | 76.4% |
| 3405367 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 48.0 | 4.58e-01 | 96.9% | 93.3% |
| 3628972 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.55 | 41.0 | 3.51e-01 | 82.9% | 48.1% |
| 3565220 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.55 | 42.0 | 4.07e-01 | 81.4% | 74.5% |
| 3799048 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 41.0 | 3.57e-01 | 82.9% | 51.0% |
| 4337796 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.54 | 44.0 | 4.25e-01 | 93.8% | 76.7% |
| 3607269 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 42.0 | 3.72e-01 | 81.4% | 58.5% |
| 3854561 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.54 | 44.0 | 4.31e-01 | 93.8% | 82.1% |
| 3992906 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.54 | 40.0 | 3.31e-01 | 77.5% | 73.9% |
| 3621256 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.54 | 39.0 | 3.24e-01 | 76.0% | 82.5% |
| 3518485 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.53 | 39.0 | 3.44e-01 | 77.5% | 80.0% |
| 3744289 | 601.1.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › GCIP_N | 0.53 | 47.0 | 4.31e-01 | 97.7% | 76.5% |
| 5050045 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 45.0 | 4.35e-01 | 95.3% | 87.3% |
| 3203655 | 601.16.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase | 0.53 | 44.0 | 4.31e-01 | 95.3% | 85.0% |
| 3627262 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.53 | 39.0 | 3.20e-01 | 80.6% | 42.1% |
| 4962836 | 5001.1.1.292 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM | 0.53 | 45.0 | 3.73e-01 | 95.3% | 78.0% |
| 3927191 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.53 | 38.0 | 3.20e-01 | 76.7% | 75.7% |
| 3230548 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.52 | 39.0 | 3.35e-01 | 83.7% | 47.4% |
| 3290037 | 150.8.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE | 0.52 | 39.0 | 3.62e-01 | 79.1% | 100.0% |
| 4465787 | 150.3.1.7 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL4 | 0.52 | 36.0 | 3.75e-01 | 98.4% | 76.7% |
| 4592879 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.52 | 40.0 | 3.32e-01 | 83.7% | 45.3% |
| 3936383 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 37.0 | 3.11e-01 | 75.2% | 83.0% |
| 3726914 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.52 | 43.0 | 4.15e-01 | 95.3% | 82.1% |
| 3486599 | 5001.1.1.8 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HlyIII | 0.51 | 43.0 | 3.30e-01 | 93.0% | 63.1% |
| 3895736 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.51 | 36.0 | 3.18e-01 | 74.4% | 93.5% |