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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00335
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00335
Identity
- Kingdom:
- phage
Quality
70.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-113
Domain cluster:
rep: KU175898.1__AMD43718.1__X__00001__D642-737
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iglB00 | 2.180.10.10 | Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core | 0.71 | 57.0 | 3.44e-01 | 100.0% | 13.4% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.62 | 56.0 | 4.20e-01 | 100.0% | 48.6% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 51.0 | 5.05e-01 | 90.3% | 90.8% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.56 | 45.0 | 4.09e-01 | 95.1% | 64.5% |
| 3mh9A00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.54 | 38.0 | 3.05e-01 | 86.4% | 37.1% |
| 3zgzD04 | 2.20.28.290 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 26.0 | 3.26e-01 | 77.7% | 77.4% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 3.97e-01 | 72.8% | 89.8% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 43.0 | 3.79e-01 | 92.2% | 87.3% |
| 1k1yB02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 45.0 | 3.45e-01 | 100.0% | 99.6% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 43.0 | 3.71e-01 | 93.2% | 61.4% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 40.0 | 4.03e-01 | 92.2% | 85.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944564 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.88 | 68.0 | 3.90e-01 | 100.0% | 9.8% |
| 3520790 | 3735.1.1.0 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein | 0.69 | 54.0 | 3.78e-01 | 96.1% | 26.5% |
| 4210618 | 3735.1.1.12 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.67 | 61.0 | 3.94e-01 | 99.0% | 73.4% |
| 2162624 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.67 | 48.0 | 4.50e-01 | 96.1% | 61.1% |
| 3812815 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.66 | 61.0 | 4.92e-01 | 100.0% | 55.3% |
| 4996269 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.66 | 60.0 | 4.62e-01 | 100.0% | 49.3% |
| 3191953 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.66 | 60.0 | 4.91e-01 | 100.0% | 55.7% |
| 4015146 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.65 | 59.0 | 4.75e-01 | 100.0% | 59.0% |
| 5047489 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.64 | 58.0 | 4.63e-01 | 100.0% | 71.7% |
| 1318713 | 3894.1.1.2 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD | 0.63 | 51.0 | 4.75e-01 | 98.1% | 70.6% |
| 3632963 | 844.1.1.3 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF6593 | 0.63 | 55.0 | 4.71e-01 | 100.0% | 60.6% |
| 2722572 | 3894.1.1.3 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M | 0.63 | 51.0 | 4.66e-01 | 96.1% | 66.7% |
| 3237193 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.62 | 51.0 | 3.00e-01 | 90.3% | 33.6% |
| 3585029 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.60 | 55.0 | 3.17e-01 | 100.0% | 26.2% |
| 4273033 | 3894.1.1.2 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD | 0.59 | 45.0 | 4.29e-01 | 96.1% | 68.0% |
| 4065996 | 3894.1.1.2 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD | 0.59 | 46.0 | 4.32e-01 | 95.1% | 66.9% |
| 3958008 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.59 | 41.0 | 3.81e-01 | 71.8% | 63.8% |
| 3965131 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.58 | 42.0 | 4.45e-01 | 78.6% | 86.7% |
| 4104506 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.57 | 25.0 | 3.85e-01 | 80.6% | 100.0% |
| 4570038 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.57 | 50.0 | 2.92e-01 | 100.0% | 28.4% |
| 3976809 | 77.1.1.6 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 | 0.57 | 41.0 | 3.45e-01 | 75.7% | 45.7% |
| 4269713 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.56 | 25.0 | 3.83e-01 | 78.6% | 100.0% |
| 5003069 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.54 | 45.0 | 3.76e-01 | 89.3% | 68.6% |
| 4979776 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.54 | 47.0 | 3.54e-01 | 100.0% | 95.3% |
| 863 | 9.4.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B | 0.51 | 39.0 | 4.00e-01 | 92.2% | 84.5% |
| 4332346 | 5.1.3.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 | 0.50 | 42.0 | 3.29e-01 | 100.0% | 88.1% |
D2
medium
residues 114-178
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iglB00 | 2.180.10.10 | Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core | 0.88 | 81.0 | 4.51e-01 | 98.5% | 9.6% |
| 1m5q102 | 3.30.310.60 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain | 0.52 | 39.0 | 4.04e-01 | 81.5% | 91.4% |
| 4ixjA02 | 3.30.1690.20 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › | 0.51 | 37.0 | 3.00e-01 | 81.5% | 70.1% |
| 1opcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.07e-01 | 73.8% | 77.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944564 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.96 | 89.0 | 4.84e-01 | 96.9% | 7.6% |
| 4007747 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.94 | 89.0 | 4.76e-01 | 100.0% | 5.9% |
| 3391427 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 45.0 | 3.95e-01 | 81.5% | 100.0% |
| 3728776 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.60 | 39.0 | 3.88e-01 | 98.5% | 62.9% |
| 3704306 | 3006.1.1.5 ↗ | a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › PF30285 | 0.59 | 44.0 | 4.39e-01 | 83.1% | 91.4% |
| 2709753 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.50 | 35.0 | 3.02e-01 | 75.4% | 73.6% |
D3
medium
residues 179-272
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8bypX01 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.83 | 77.0 | 4.90e-01 | 100.0% | 70.9% |
| 1e1hA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.81 | 74.0 | 5.41e-01 | 97.9% | 79.1% |
| 4jixB00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.62 | 48.0 | 4.70e-01 | 92.6% | 75.0% |
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 45.0 | 4.20e-01 | 76.6% | 64.1% |
| 1ycoA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.60 | 54.0 | 3.81e-01 | 98.9% | 98.9% |
| 3regA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 50.0 | 4.08e-01 | 96.8% | 94.7% |
| 4kx7A02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 50.0 | 3.72e-01 | 100.0% | 79.1% |
| 4wz9A02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 49.0 | 3.66e-01 | 100.0% | 79.9% |
| 4dz4A00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.55 | 48.0 | 3.42e-01 | 100.0% | 85.3% |
| 4jgbB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 46.0 | 3.62e-01 | 94.7% | 93.2% |
| 4i8iA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 46.0 | 3.43e-01 | 97.9% | 84.2% |
| 1h8lA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 45.0 | 3.30e-01 | 98.9% | 78.4% |
| 4qqrB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.22e-01 | 92.6% | 72.0% |
| 5bt9D00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 45.0 | 3.35e-01 | 95.7% | 87.7% |
| 4fcaA02 | 3.40.390.80 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Peptidase M60, enhancin-like domain 2 | 0.52 | 44.0 | 3.93e-01 | 93.6% | 77.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025675 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.65 | 57.0 | 4.58e-01 | 100.0% | 95.9% |
| 3217478 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 44.0 | 4.57e-01 | 94.7% | 75.6% |
| 4972072 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.62 | 55.0 | 4.57e-01 | 97.9% | 80.0% |
| 4028152 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.60 | 52.0 | 3.80e-01 | 95.7% | 41.6% |
| 4018091 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.59 | 52.0 | 4.37e-01 | 100.0% | 93.3% |
| 3721993 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.59 | 52.0 | 3.81e-01 | 100.0% | 72.8% |
| 3960954 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.58 | 51.0 | 4.35e-01 | 97.9% | 69.0% |
| 5072923 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.58 | 50.0 | 3.76e-01 | 98.9% | 79.4% |
| 3619594 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.57 | 51.0 | 3.72e-01 | 100.0% | 75.6% |
| 3402963 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.57 | 51.0 | 3.75e-01 | 100.0% | 80.0% |
| 3957469 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.57 | 45.0 | 3.90e-01 | 93.6% | 54.0% |
| 3923257 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.56 | 50.0 | 3.67e-01 | 100.0% | 78.5% |
| 2898625 | 2498.1.1.41 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60 | 0.56 | 50.0 | 3.49e-01 | 100.0% | 60.9% |
| 3386105 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.56 | 44.0 | 4.02e-01 | 92.6% | 63.1% |
| 1156539 | 2007.5.1.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF4886 | 0.55 | 46.0 | 3.43e-01 | 94.7% | 82.6% |
| None | — | 0.53 | 45.0 | 3.17e-01 | 92.6% | 67.8% | |
| 3803872 | 2003.1.1.52 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind | 0.53 | 44.0 | 3.15e-01 | 92.6% | 67.8% |
| 3315238 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.52 | 43.0 | 3.09e-01 | 92.6% | 66.7% |
| 3291494 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.52 | 45.0 | 3.43e-01 | 100.0% | 71.0% |