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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00345
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00345
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-61
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zliA02 | 1.20.58.1370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 50.0 | 4.33e-01 | 75.4% | 44.7% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 52.0 | 4.36e-01 | 75.4% | 83.5% |
| 2r0cA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.69 | 48.0 | 3.03e-01 | 71.9% | 70.2% |
| 1o7dC01 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.68 | 48.0 | 4.74e-01 | 80.7% | 70.5% |
| 1gkpA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.62 | 44.0 | 2.74e-01 | 75.4% | 12.7% |
| 2pgsA03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.61 | 52.0 | 4.30e-01 | 93.0% | 58.8% |
| 3gagA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.59 | 45.0 | 3.07e-01 | 84.2% | 52.9% |
| 3hugD00 | 1.10.10.1320 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain | 0.51 | 34.0 | 3.40e-01 | 71.9% | 64.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3735607 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.83 | 68.0 | 6.07e-01 | 96.5% | 63.7% |
| 3697800 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.76 | 66.0 | 5.14e-01 | 94.7% | 48.7% |
| 4602077 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.75 | 60.0 | 3.49e-01 | 93.0% | 11.0% |
| 3725506 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.74 | 67.0 | 5.32e-01 | 100.0% | 52.7% |
| 3639859 | 5001.1.1.62 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › YIF1 | 0.68 | 59.0 | 4.08e-01 | 100.0% | 64.5% |
| 3194364 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.64 | 55.0 | 3.28e-01 | 100.0% | 16.3% |