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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00374
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00374
Identity
- Kingdom:
- phage
Quality
67.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-113
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.65 | 40.0 | 3.97e-01 | 73.8% | 56.9% |
| 3uh8A00 | 2.60.40.3350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 40.0 | 3.87e-01 | 84.5% | 57.6% |
| 3doaA03 | 3.40.970.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like | 0.61 | 25.0 | 3.54e-01 | 73.8% | 83.7% |
| 6grsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 36.0 | 3.76e-01 | 83.5% | 70.5% |
| 3buxB03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 29.0 | 3.15e-01 | 87.4% | 57.0% |
| 6ks6a01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.55 | 47.0 | 3.51e-01 | 97.1% | 51.3% |
| 2orzA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 36.0 | 3.18e-01 | 85.4% | 44.8% |
| 1pqzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 35.0 | 3.59e-01 | 80.6% | 67.3% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.53 | 45.0 | 3.42e-01 | 97.1% | 52.0% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 37.0 | 3.75e-01 | 72.8% | 80.2% |
| 4jzjC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.56e-01 | 87.4% | 69.2% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 41.0 | 3.45e-01 | 87.4% | 58.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600531 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.66 | 35.0 | 4.68e-01 | 72.8% | 100.0% |
| 3590261 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.62 | 40.0 | 4.77e-01 | 92.2% | 100.0% |
| 3825960 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.55 | 27.0 | 3.53e-01 | 73.8% | 100.0% |
| 3501768 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 32.0 | 3.76e-01 | 74.8% | 87.1% |
| 3954591 | 1075.1.2.3 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DUF2567 | 0.53 | 40.0 | 3.53e-01 | 82.5% | 96.9% |