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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00394
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00394
Identity
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-54_161-178
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ex2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.73 | 55.0 | 4.05e-01 | 80.6% | 61.6% |
| 4h0nA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 43.0 | 3.12e-01 | 84.7% | 85.8% |
| 1z7mE02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 39.0 | 3.77e-01 | 90.3% | 66.7% |
| 2jtqA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.54 | 32.0 | 3.07e-01 | 100.0% | 51.8% |
| 1xdiA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 38.0 | 3.23e-01 | 75.0% | 74.8% |
| 4yb6A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 38.0 | 3.63e-01 | 90.3% | 63.3% |
| 3tnyA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.53 | 37.0 | 3.30e-01 | 75.0% | 81.3% |
| 2rgyA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 41.0 | 3.55e-01 | 88.9% | 63.7% |
| 4lpsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 3.01e-01 | 93.1% | 78.1% |
| 4hjhA02 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.50 | 38.0 | 3.74e-01 | 86.1% | 97.5% |
| 1e3jA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 40.0 | 3.29e-01 | 88.9% | 84.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961140 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.80 | 65.0 | 4.72e-01 | 86.1% | 64.4% |
| 1144701 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.73 | 57.0 | 4.05e-01 | 83.3% | 60.6% |
| 4990381 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 46.0 | 3.79e-01 | 97.2% | 59.3% |
| 3941749 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.55 | 43.0 | 3.73e-01 | 84.7% | 100.0% |
| 3814601 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.54 | 44.0 | 2.94e-01 | 90.3% | 33.1% |
| 4069467 | 4978.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase | 0.52 | 36.0 | 3.43e-01 | 73.6% | 92.2% |
| 3897249 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.51 | 35.0 | 2.72e-01 | 70.8% | 92.6% |
| 3998328 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.51 | 38.0 | 2.60e-01 | 81.9% | 73.8% |
| 3236889 | 2007.1.16.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn | 0.51 | 38.0 | 3.50e-01 | 86.1% | 71.4% |
D2
medium
residues 55-160
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01725.22 best | Ham1p_like | 31.6 | 2.20e-07 | 95.3% | 36.9% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b78A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.86 | 81.0 | 6.58e-01 | 100.0% | 63.0% |
| 2carB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.86 | 81.0 | 6.44e-01 | 100.0% | 60.3% |
| 4bnqB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.85 | 80.0 | 6.39e-01 | 100.0% | 63.0% |
| 1vp2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.83 | 78.0 | 6.29e-01 | 100.0% | 63.0% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.80 | 42.0 | 5.02e-01 | 100.0% | 74.7% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.70 | 29.0 | 3.81e-01 | 75.5% | 69.6% |
| 1ex2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.65 | 59.0 | 4.87e-01 | 100.0% | 60.5% |
| 2amhA00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.64 | 58.0 | 4.76e-01 | 100.0% | 59.5% |
| 4jhcB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.64 | 57.0 | 4.75e-01 | 100.0% | 57.1% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.58 | 36.0 | 2.81e-01 | 100.0% | 26.4% |
| 4l8hB00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.56 | 37.0 | 3.59e-01 | 99.1% | 59.3% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.56 | 28.0 | 2.51e-01 | 97.2% | 31.1% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 36.0 | 2.95e-01 | 73.6% | 87.3% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 44.0 | 4.27e-01 | 97.2% | 89.3% |
| 5nj5A01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.51 | 44.0 | 3.40e-01 | 95.3% | 82.2% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4887051 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.87 | 83.0 | 6.68e-01 | 100.0% | 62.0% |
| 4947058 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.87 | 83.0 | 6.67e-01 | 100.0% | 63.2% |
| 5051084 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.87 | 82.0 | 6.58e-01 | 100.0% | 62.6% |
| None | — | 0.86 | 82.0 | 6.51e-01 | 100.0% | 60.0% | |
| 5046303 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 82.0 | 6.58e-01 | 100.0% | 61.2% |
| 3681285 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 82.0 | 6.42e-01 | 100.0% | 58.0% |
| 4938058 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 81.0 | 6.60e-01 | 100.0% | 61.2% |
| 3925379 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 81.0 | 6.34e-01 | 100.0% | 60.5% |
| 4477878 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 81.0 | 6.05e-01 | 100.0% | 60.9% |
| 4027541 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 81.0 | 6.42e-01 | 100.0% | 57.6% |
| 4943139 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.86 | 81.0 | 6.50e-01 | 100.0% | 61.6% |
| None | — | 0.86 | 81.0 | 6.39e-01 | 100.0% | 58.0% | |
| 5026656 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.85 | 81.0 | 6.43e-01 | 100.0% | 60.5% |
| 4164014 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.85 | 80.0 | 6.17e-01 | 100.0% | 61.5% |
| 3962300 | 7504.1.1.0 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like | 0.84 | 80.0 | 6.45e-01 | 100.0% | 65.9% |
| 4425733 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.84 | 79.0 | 6.26e-01 | 100.0% | 63.0% |
| 4588443 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.84 | 79.0 | 6.27e-01 | 100.0% | 61.6% |
| 4968624 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.84 | 79.0 | 6.34e-01 | 100.0% | 60.5% |
| 4323146 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.84 | 79.0 | 6.33e-01 | 100.0% | 61.6% |
| 4609162 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.83 | 79.0 | 6.22e-01 | 100.0% | 61.5% |
| None | — | 0.83 | 79.0 | 6.45e-01 | 100.0% | 63.3% | |
| 5054101 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.83 | 78.0 | 6.28e-01 | 100.0% | 63.7% |
| 4402449 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.83 | 78.0 | 6.13e-01 | 100.0% | 60.5% |
| 4056106 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.81 | 76.0 | 6.13e-01 | 100.0% | 61.6% |
| 5030104 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.80 | 74.0 | 5.96e-01 | 100.0% | 64.6% |
| 3672943 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 41.0 | 5.00e-01 | 97.2% | 95.4% |
| 3289119 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 30.0 | 2.02e-01 | 93.4% | 11.9% |
| 3816855 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.66 | 41.0 | 3.89e-01 | 99.1% | 52.0% |
| 4679976 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.66 | 60.0 | 5.03e-01 | 100.0% | 61.7% |
| 4442356 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.65 | 60.0 | 4.82e-01 | 100.0% | 56.8% |
| 4466135 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.65 | 59.0 | 4.87e-01 | 100.0% | 59.8% |
| 4668956 | 7504.1.1.0 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like | 0.65 | 59.0 | 4.82e-01 | 100.0% | 57.4% |
| 4041654 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.65 | 59.0 | 4.94e-01 | 100.0% | 61.7% |
| 4116388 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.65 | 59.0 | 4.84e-01 | 100.0% | 58.9% |
| 4347622 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.65 | 59.0 | 4.79e-01 | 100.0% | 57.4% |
| 5057877 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.64 | 58.0 | 4.78e-01 | 100.0% | 58.9% |
| 4654286 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.64 | 58.0 | 4.67e-01 | 100.0% | 57.0% |
| 3386537 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.63 | 57.0 | 4.75e-01 | 100.0% | 61.2% |
| 5059367 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.62 | 56.0 | 4.65e-01 | 100.0% | 58.9% |
| 4634579 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.61 | 55.0 | 4.64e-01 | 99.1% | 61.7% |
| 5078525 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.60 | 51.0 | 4.74e-01 | 92.5% | 97.8% |
| 3596526 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 39.0 | 3.93e-01 | 100.0% | 64.5% |
| 5029482 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 32.0 | 3.67e-01 | 83.0% | 73.8% |
| 3462119 | 9.1.1.23 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N | 0.55 | 42.0 | 3.52e-01 | 100.0% | 47.0% |
| 3611845 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.52 | 43.0 | 3.10e-01 | 100.0% | 32.5% |
| 3510355 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.50 | 44.0 | 4.28e-01 | 99.1% | 85.8% |
| 3972144 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.50 | 40.0 | 3.25e-01 | 85.8% | 99.5% |
| 2659065 | 265.1.1.3 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat | 0.50 | 34.0 | 3.53e-01 | 91.5% | 74.3% |