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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00404
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00404
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 33-100
D2
medium
residues 101-166
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4evfA01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.74 | 55.0 | 5.45e-01 | 81.8% | 100.0% |
| 2ii2A01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.73 | 54.0 | 5.36e-01 | 80.3% | 100.0% |
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.70 | 54.0 | 5.26e-01 | 84.8% | 100.0% |
| 4rlyA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.69 | 58.0 | 3.84e-01 | 100.0% | 24.4% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 49.0 | 4.11e-01 | 90.9% | 58.3% |
| 1rz4A01 | 1.25.40.250 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 | 0.60 | 52.0 | 4.33e-01 | 100.0% | 65.0% |
| 1c02A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.58 | 45.0 | 3.45e-01 | 86.4% | 68.1% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.57 | 45.0 | 3.42e-01 | 87.9% | 54.8% |
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.52 | 39.0 | 3.30e-01 | 81.8% | 54.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1873306 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.74 | 56.0 | 5.48e-01 | 83.3% | 100.0% |
| 1873739 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.73 | 54.0 | 5.38e-01 | 81.8% | 100.0% |
| 3456203 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.72 | 64.0 | 4.88e-01 | 100.0% | 47.1% |
| 3818260 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.70 | 57.0 | 4.49e-01 | 90.9% | 49.3% |
| 3607471 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 59.0 | 4.59e-01 | 100.0% | 66.5% |
| 3749173 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.69 | 59.0 | 5.10e-01 | 100.0% | 75.5% |
| 3650697 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.69 | 54.0 | 3.97e-01 | 87.9% | 32.4% |
| 3657260 | 109.59.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › PPR | 0.67 | 54.0 | 5.17e-01 | 87.9% | 84.0% |
| 3310783 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.67 | 58.0 | 4.01e-01 | 100.0% | 59.6% |
| 3374387 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.66 | 57.0 | 3.54e-01 | 100.0% | 18.5% |
| 3817999 | 109.4.1.1271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 | 0.65 | 56.0 | 3.83e-01 | 97.0% | 29.6% |
| 4024369 | 109.3.1.164 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 | 0.64 | 56.0 | 3.77e-01 | 100.0% | 29.6% |
| 3809438 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.63 | 53.0 | 4.44e-01 | 95.5% | 80.0% |
| 3320986 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.63 | 53.0 | 3.45e-01 | 97.0% | 20.6% |
| 5050035 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.61 | 46.0 | 3.38e-01 | 83.3% | 82.6% |
| 3701006 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.61 | 51.0 | 4.58e-01 | 100.0% | 92.0% |
| 4009331 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 48.0 | 3.86e-01 | 97.0% | 45.7% |
| 3196470 | 109.59.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain | 0.56 | 46.0 | 4.29e-01 | 100.0% | 87.6% |
| 4993779 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.54 | 42.0 | 2.94e-01 | 84.8% | 64.4% |
D3
medium
residues 167-231
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ha4B00 | 1.20.58.690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 54.0 | 4.49e-01 | 100.0% | 62.5% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.62 | 44.0 | 3.92e-01 | 75.4% | 85.3% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 44.0 | 4.23e-01 | 75.4% | 87.7% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 44.0 | 4.19e-01 | 76.9% | 78.7% |
| 1rktA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 42.0 | 3.33e-01 | 76.9% | 75.5% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 43.0 | 3.66e-01 | 84.6% | 90.0% |
| 3rvyA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.57 | 42.0 | 3.51e-01 | 78.5% | 64.9% |
| 1mhyG01 | 1.20.1280.10 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 | 0.57 | 38.0 | 3.82e-01 | 70.8% | 76.5% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 48.0 | 4.40e-01 | 100.0% | 70.5% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 40.0 | 3.48e-01 | 76.9% | 61.8% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 41.0 | 3.96e-01 | 81.5% | 98.7% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 40.0 | 3.39e-01 | 80.0% | 56.9% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 41.0 | 3.09e-01 | 84.6% | 66.2% |
| 2ccyA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.52 | 41.0 | 3.34e-01 | 86.2% | 79.5% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.50 | 39.0 | 3.34e-01 | 90.8% | 73.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3784475 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.64 | 32.0 | 2.39e-01 | 96.9% | 19.5% |
| 5018187 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.62 | 42.0 | 4.27e-01 | 70.8% | 100.0% |
| 4029168 | 4984.1.1.0 ↗ | alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain | 0.62 | 45.0 | 3.67e-01 | 78.5% | 86.9% |
| 5074963 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 43.0 | 4.26e-01 | 76.9% | 87.1% |
| 3933548 | 109.4.1.471 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC | 0.59 | 50.0 | 3.94e-01 | 100.0% | 57.3% |
| 3190607 | 6169.1.1.59 ↗ | extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › PLAC8 | 0.56 | 47.0 | 4.33e-01 | 93.8% | 74.1% |
| 4966183 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 41.0 | 4.19e-01 | 80.0% | 84.6% |
| 5028635 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.56 | 47.0 | 3.74e-01 | 98.5% | 44.8% |
| 3320951 | 601.2.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr | 0.55 | 43.0 | 3.64e-01 | 90.8% | 74.2% |
| 2067201 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.55 | 37.0 | 3.53e-01 | 96.9% | 59.7% |
| 4940379 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.52 | 36.0 | 3.04e-01 | 73.8% | 68.7% |
| 3708811 | 195.1.1.3 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N | 0.51 | 35.0 | 2.80e-01 | 72.3% | 92.8% |